PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G048403_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1134aa MW: 122524 Da PI: 8.0094 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 8.9e-09 | 744 | 775 | 14 | 47 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 d+++++G + Wk+I +++g ++t q++s+ qky GRMZM2G048403_P01 744 DVIQKFGRD-WKKIEEHVG-TKTTVQIRSHAQKY 775 7899***77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.38.10 | 1.9E-6 | 145 | 177 | No hit | No description |
Pfam | PF00501 | 6.4E-9 | 147 | 184 | IPR000873 | AMP-dependent synthetase/ligase |
SuperFamily | SSF56801 | 1.2E-26 | 151 | 246 | No hit | No description |
Gene3D | G3DSA:3.30.300.30 | 5.1E-14 | 181 | 246 | No hit | No description |
SuperFamily | SSF50978 | 3.11E-17 | 550 | 680 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 14 | 552 | 589 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 8.1E-16 | 552 | 680 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 46 | 596 | 637 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.0044 | 640 | 679 | IPR001680 | WD40 repeat |
PROSITE profile | PS51294 | 9.403 | 723 | 780 | IPR017930 | Myb domain |
CDD | cd00167 | 2.66E-4 | 735 | 776 | No hit | No description |
Pfam | PF00249 | 4.6E-7 | 744 | 775 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.6E-9 | 744 | 778 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.26E-7 | 745 | 781 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1134 aa Download sequence Send to blast |
MNLTIRHMAQ INIFIRFFYL HPQSRPHGFD RQMPFASWWF LLLSGHLEAT MLQKLQLRRE 60 AYQFYHQEPI SQGSGVLLDL LAFLFFGLLK QPHQNSLILH AFTDLVCSYV RVNLLLSSKV 120 NRQGNISRMA DMYLTGRSLH AKNNNVRATE FTIKQGWLHT GDIGYFDEGG QLFVVDRLKE 180 LIKYKGFQIA PAELEGLLLS HLEIMDAVVI PLPNAKAGEV PIAYIVRSPD SSLTEVDVQK 240 FIEKQVTTTS PTGTHKLANP KGFSLHFSGS DIGGGYELYV DEAKPRGDDQ RGGGRSGGRS 300 GGRFGDRSGG RRGGGRFGER SGAGMVAADS MADAVEVELD GDVYITGNGS LVLLSGASLT 360 CEKYGCVISA NFLGEVRLSR GVRVTAGRVS LVATNITVAD TVVVNTSALA GDPPDQTSGV 420 PTGTHGNGGE HGGRGASCFV KQGQTQEDSW GGDAYAWSDL EHPWSYGSKG GSTRVEKDYG 480 GAGGGIVWLF AEDLVMNGIV LANGGDSNEK GGGGSGGSIF IRAASIDLRC GNASLVNQAE 540 FGKQLPIGED QQYKLVATWS RHEEKVNMLY LFGEYVLSAD AKGNVFMWAF RGAEPNIEPV 600 GSISLGDKFT PTCIMHPDTY LNKVIVGSEE GFLQLWNIST KKKLYDFNGW NSPVRCCVSS 660 PVLDVVAVGC SDGSVHVHNM IAKVAVVFHD VNVAHSSHQY VATGMPTKAA LKISVETPVD 720 CATVVVQGVL NADAESEKLW KKKDVIQKFG RDWKKIEEHV GTKTTVQIRS HAQKYFLKVQ 780 KLGLAAGLPP MYPRHHFAMQ QQQQSSVAGG SSAAAMPLLH GRQPTCASVA MPGLAEPDAV 840 AHHGSIGWSS PSVVVPAASS AASGSQFIGA PSLCDTSIDW AGGGGGSGSP KDVSFAQVYR 900 FVGDMFDADA PVPVEAHLQK LKEMDNITTK TVLLVLRNLE NNLSAPQFEP VMELTRLSDT 960 SKLDRLSTPD AFNMCRIARP EPGCLMLGGT VSKRCSGPGP VGKAIKLNEE KTEALQLEKA 1020 CVVASLIQVI NTQKASGVRR RLYYGPVPIM GRTNLDAGTD LVAKTQKYPL SNFKDDMLHF 1080 RKKLAAILLF SDINKRKGCP LYKYDKEVDA GSSSDVQILD SPTNPKKMKL LCVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6abh_A | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_B | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_C | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_D | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_E | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_F | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_G | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6abh_H | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6ac3_A | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6ac3_B | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6ac3_C | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
6ac3_D | 9e-28 | 122 | 249 | 384 | 507 | Red-bioluminescence eliciting luciferase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 308 | 314 | GGRRGGG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G048403 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G048403_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC165173 | 0.0 | AC165173.2 Zea mays clone ZMMBBb-125O19, complete sequence. | |||
GenBank | BT034480 | 0.0 | BT034480.1 Zea mays full-length cDNA clone ZM_BFc0173J01 mRNA, complete cds. | |||
GenBank | EU965366 | 0.0 | EU965366.1 Zea mays clone 285584 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | GRMZM2G048403_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 2e-18 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G048403_P01 |