PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G048136_P01 | ||||||||
Common Name | LOC100283510, ZEAMMB73_238341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18617.3 Da PI: 7.4612 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E+ +++++++++G++ W++Iar+++ gRt++++k++w++++ GRMZM2G048136_P01 2 SPQEERIIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.78 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 2.30E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 1.5E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.72E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009074 | anatomy | style | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSPQEERIII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMGMPSPSSS 60 SSSLTYQTCL LDTIPVIGMG SGDTHNGSCV TSTLENTQSV MDGYPMDQIW KEIEAPHAPN 120 LLSIAEGKEK TCSSSPCHLP SPVMWDYKCP EIFWKMGDQE IMM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20682 | 0.0 | aerial organ| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G048136 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G048136_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727898 | 0.0 | KJ727898.1 Zea mays clone pUT5992 MYB transcription factor (MYB88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149882.1 | 1e-118 | MYB59 | ||||
Swissprot | Q53NK6 | 2e-75 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | K7UNQ8 | 1e-118 | K7UNQ8_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G048136_P02 | 1e-118 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 4e-31 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G048136_P01 |
Publications ? help Back to Top | |||
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