PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G047999_P01 | ||||||||
Common Name | EREB178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 32805.8 Da PI: 4.3992 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 72 | 123 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++++g+ GRMZM2G047999_P01 72 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 123 5799******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-29 | 72 | 131 | No hit | No description |
SMART | SM00380 | 1.6E-32 | 73 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-21 | 73 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 73 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-11 | 73 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 73 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MQQQQPLSLR LSALASTTAT NNSLYSFSVC VLLCSCMDFS YLFSSSSSEK KSSKRLQQQQ 60 LLQQQDNNSN ETRYLGVRRR PWGRYAAEIR DPATKERHWL GTFDTAEEAA IAYDRAARNI 120 RGANARTNFA YPDLPPGSSV TPYLSPDLSA DQLQHYYYAN NDPVAPAADQ PPTPACDQSA 180 HGGAAGTEAY QYYHHVPVEM MSSYGAAEGA SVMDYGGNPE MGMYFEGNGS GGDDDRAWCE 240 ASSELLFGGY SDDAAAAPAN ASHGMYFEEG YVHSPMFSPM PAADEVDGFQ LGGPSSSSYY 300 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 74 | 129 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G047999 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G047999_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727867 | 0.0 | KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647052.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A060D6U5 | 0.0 | A0A060D6U5_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G047999_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 1e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G047999_P01 |