PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G047715_P01 | ||||||||
Common Name | ZEAMMB73_616510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 346aa MW: 37141.8 Da PI: 5.1833 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 180 | 234 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+ +++++ +++ +LAk+l+L rqV vWFqNrRa+ k GRMZM2G047715_P01 180 RKKLRLSKEQSAFLEDSFKAHSTLTPKQKSDLAKRLKLRPRQVEVWFQNRRARSK 234 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.4e-39 | 180 | 268 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE+sF+++++L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+d+e+Lkr++++l++en+rL++ev+eLr+ GRMZM2G047715_P01 180 RKKLRLSKEQSAFLEDSFKAHSTLTPKQKSDLAKRLKLRPRQVEVWFQNRRARSKLKQTEVDCEYLKRWCEKLAQENRRLQREVAELRR 268 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-17 | 162 | 234 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 176 | 236 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.61E-18 | 177 | 245 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-16 | 178 | 240 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.29E-17 | 180 | 237 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 180 | 234 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 211 | 234 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.4E-19 | 236 | 279 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.7E-10 | 236 | 268 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MTSPLLVSYP SSILDMELEL SLGDSRAPAK SASTPAALTP IHAGAGGEGH ELALELGVGA 60 AKRAEQDNQK TPVQPEHVQE EEEEEETCPY SESPAELSLI GCPLLPAASA EIGSVNSSEV 120 CVRRGFGVDA VLVDGGDAAQ GRPALSTSFL PSEFLVRRQA DDQEAAAEDE EMSGVGGGAR 180 KKLRLSKEQS AFLEDSFKAH STLTPKQKSD LAKRLKLRPR QVEVWFQNRR ARSKLKQTEV 240 DCEYLKRWCE KLAQENRRLQ REVAELRRLC SAAYPFYGAA AGFGVATARV CPSSCDNDVS 300 EAAISGAPSA AAPPPSTLFA SWPPHFGPFT VVVPPLLRRQ PSATTS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 228 | 236 | RRARSKLKQ |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G047715 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G047715_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678710.1 | 0.0 | homeobox-leucine zipper protein HOX7 | ||||
Swissprot | A2X674 | 1e-93 | HOX7_ORYSI; Homeobox-leucine zipper protein HOX7 | ||||
Swissprot | Q0E0A6 | 9e-94 | HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A3L6EZU9 | 0.0 | A0A3L6EZU9_MAIZE; Homeobox-leucine zipper protein HOX7 | ||||
STRING | GRMZM2G047715_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12894 | 30 | 35 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-46 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G047715_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|