PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G047600_P01
Common NameLOC103635051, MYB90, ZEAMMB73_269592, Zm.129624
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 318aa    MW: 34674.9 Da    PI: 5.0931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G047600_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-143885148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd  l+  v+ +G g+W+  a   g++Rt+k+c++rw++yl
  GRMZM2G047600_P01 38 RGPWTVEEDAVLAGHVAAHGEGRWNELACAAGLRRTGKSCRLRWLNYL 85
                       89********************************************97 PP
2Myb_DNA-binding48.52.1e-1591134146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T+ E++l +d++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G047600_P01  91 RGGFTPREQLLVLDLHSRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 134
                        788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2423385IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-193488IPR009057Homeodomain-like
SuperFamilySSF466895.99E-2936132IPR009057Homeodomain-like
SMARTSM007173.5E-103787IPR001005SANT/Myb domain
PfamPF002491.4E-123885IPR001005SANT/Myb domain
CDDcd001672.01E-74085No hitNo description
PROSITE profilePS5129420.55186140IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2289138IPR009057Homeodomain-like
SMARTSM007171.5E-1390138IPR001005SANT/Myb domain
PfamPF002494.6E-1491134IPR001005SANT/Myb domain
CDDcd001672.52E-1094134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAVLWKGSSS SPCDWPEATV TTVSDADDDA AAAAELRRGP WTVEEDAVLA GHVAAHGEGR  60
WNELACAAGL RRTGKSCRLR WLNYLRPGVR RGGFTPREQL LVLDLHSRWG NRWSRIAAHL  120
PGRTDNEVKN YWRTRVQKHA RQLGCAVGSR QFNDAVRNLW VPRLLERIHA DDSAAAAAAD  180
ADADASRCCY SASPSHDELS SSHPAHRNAA PITGDDCARA PSPDVSSVVT GSSWSREASP  240
TSQLFKSSSS TVEGCSTSTE TEQCQNGCSS SATSVDMFDE SWSELLARAI HDDDAEFGSG  300
ETGDSWWSLE DIWEQPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-233513824126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G047600
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G047600_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276660.0KJ727666.1 Zea mays clone pUT5593 MYB transcription factor (MYB90) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655821.10.0transcription factor JAMYB
SwissprotQ2QZJ89e-76JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLK7VBX60.0K7VBX6_MAIZE; MYB transcription factor
STRINGGRMZM2G047600_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP1422434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-70myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]