PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G046829_P01 | ||||||||
Common Name | LOC100283120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 176aa MW: 18573.2 Da PI: 7.3411 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 151.8 | 6.2e-47 | 16 | 172 | 6 | 167 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +e++ yvqC+fC til+v vP l+k+v+v+CG C +lsv l +a+ + l + ++e +v+ +s +++ e + GRMZM2G046829_P01 16 LPERLGYVQCKFCATILLVGVPIGGslqLLKTVAVQCGSCCGILSVALPPDEAPAPASVE----LLPLMQEAGGVDPPPRDSDESSGEDRGE 103 689*******************8642226899****************999988888876....5555555555555544444333333333 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++++ + d++++ p v++PP ++qr Psayn+fikeeiqrika +P i+h+eafsaa+knWah+P+i GRMZM2G046829_P01 104 TTEAAT---VADNHAA-FPAVNKPPLRKQRTPSAYNCFIKEEIQRIKARDPGITHKEAFSAASKNWAHLPRIQ 172 333322...2333333.578**************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.8E-46 | 17 | 172 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-7 | 121 | 173 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-5 | 128 | 173 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSSSSSPRHP CFGAALPERL GYVQCKFCAT ILLVGVPIGG SLQLLKTVAV QCGSCCGILS 60 VALPPDEAPA PASVELLPLM QEAGGVDPPP RDSDESSGED RGETTEAATV ADNHAAFPAV 120 NKPPLRKQRT PSAYNCFIKE EIQRIKARDP GITHKEAFSA ASKNWAHLPR IQKTGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.128777 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G046829 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G046829_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963489 | 0.0 | EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651472.1 | 1e-127 | axial regulator YABBY2 isoform X1 | ||||
Swissprot | A2PZN8 | 6e-51 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A1D6IHD6 | 1e-126 | A0A1D6IHD6_MAIZE; Axial regulator YABBY2 | ||||
STRING | GRMZM2G046829_P01 | 1e-127 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 | Representative plant | OGRP13973 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-35 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G046829_P01 |
Entrez Gene | 100283120 |
Publications ? help Back to Top | |||
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