PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G046443_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 353aa    MW: 38525.2 Da    PI: 9.3603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G046443_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-1175120146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+WT++Ede l + v + G++ W++I ++  + Rt+k+c++rw +
  GRMZM2G046443_P01  75 KGPWTEDEDEVLRRHVMENGPREWSSIRSKGLLPRTGKSCRLRWVN 120
                        79*************************8876677**********87 PP
2Myb_DNA-binding38.82.1e-12131171345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +++++E+   +d+ +q+G++ W++Ia ++  gRt++++k++w 
  GRMZM2G046443_P01 131 KFSADEERVVIDLQAQFGNK-WARIATYLS-GRTDNDVKNFWS 171
                        79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.16670122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-1973123IPR009057Homeodomain-like
SuperFamilySSF466894.69E-2574170IPR009057Homeodomain-like
SMARTSM007173.3E-1074124IPR001005SANT/Myb domain
CDDcd001677.31E-1177122No hitNo description
PfamPF139215.1E-1178128No hitNo description
PROSITE profilePS5129419.725123178IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-17124176IPR009057Homeodomain-like
SMARTSM007177.9E-11128176IPR001005SANT/Myb domain
PfamPF002494.3E-10131171IPR001005SANT/Myb domain
CDDcd001676.06E-9131170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRGAAGHSSP PRSHVRSQFS FTTRDELPHH TTLHSLYCRS RARVRGRSCS LAPADRGRTM  60
KPYGGGRELS AWVRKGPWTE DEDEVLRRHV MENGPREWSS IRSKGLLPRT GKSCRLRWVN  120
KLRPDIKKGC KFSADEERVV IDLQAQFGNK WARIATYLSG RTDNDVKNFW STRQKRLARL  180
QRAPGPRRRP GGASSSRGNK ARTLLHTGGG GSSSSSRPAG DEQEPHPCTV APLAIVLPTH  240
CRYDGGAPAE LGSSSSSATP AAAIRLLSFC CGGGNGAESM AASGVDPLVF VDPDDEEAFC  300
PEPLAVVPPT PFFGLDEEYL HFGSAAAKQP DVRFDDLPPE TLDFFDLPPS GQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-24751764103C-Myb DNA-Binding Domain
1msf_C8e-24751764103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G046443
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G046443_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666486.10.0transcription factor DUO1
TrEMBLA0A1D6KJA20.0A0A1D6KJA2_MAIZE; Myb-like HTH transcriptional regulator family protein
STRINGGRMZM2G046443_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-55MYB family protein