PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G046438_P01 | ||||||||
Common Name | LOC100382037, MYBR90 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23994.1 Da PI: 10.3759 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 119 | 167 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT E e+l+++v ++G g+W++ +++ Rt+ ++k++w+++l GRMZM2G046438_P01 119 SRWTSKEVERLARGVSRFGVGQWTLLKQEFFksSIRTAVNLKDKWRNLL 167 59****************************99988************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.933 | 113 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-14 | 115 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-5 | 117 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-11 | 119 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-6 | 120 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.83E-18 | 120 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEPAPTEQDY GFLGDLQLST TIDSPHILQI DNRGVRDEHT VMILQLLEGP QDETNLDDWL 60 SGDLHPSPLL ETNAHYQPRC RKSGRRGARR RRTSPWDPMF FERPVSREYS TAKGRKNNSR 120 WTSKEVERLA RGVSRFGVGQ WTLLKQEFFK SSIRTAVNLK DKWRNLLKGY QENSQKSTLL 180 YLEPSLVEKI RNLAAKQPYP YRRHR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.38842 | 0.0 | meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G046438 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G046438_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062961 | 0.0 | BT062961.1 Zea mays full-length cDNA clone ZM_BFc0013B08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168273.1 | 1e-152 | uncharacterized protein LOC100382037 | ||||
TrEMBL | C0P3U2 | 1e-150 | C0P3U2_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G046438_P01 | 1e-151 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.2 | 6e-16 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G046438_P01 |
Entrez Gene | 100382037 |