PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G045883_P01
Common NamebHLH161, LOC100217195
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 352aa    MW: 37113.8 Da    PI: 6.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G045883_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13139190155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +rr+h ++Er+RR+++N+ ++ Lr+ +P++   + ++ + a+i+  A++++k+L+
  GRMZM2G045883_P01 139 QRRNHIAVERNRRRQMNEYLSVLRSAMPPS---YTQRGDQASIVAGAINFVKELE 190
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-13137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-14137194No hitNo description
SuperFamilySSF474591.02E-16137210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.085138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-10144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALEAVVFPK EHPGCTAVKA RPASLGCGFH TEELEVEDKG GVVLQGEAAD ALPPPGGAAT  60
TWDWDAVLCP CSTAPAAGAV EECWDVQQQQ HQLLSVSPPP SSAVAASSSG RRKAAASEAA  120
RRRRRRPKAV RNTDEMESQR RNHIAVERNR RRQMNEYLSV LRSAMPPSYT QRGDQASIVA  180
GAINFVKELE QLLQSLEAQK RCTEPPAPAP FAGFFIFPQY STTAATGGAV GSSSDSAGSG  240
GDQSGGGGGC AGARRGVADI EVSLAESHAN VKVLAARRPR QLLRMVVALQ CLGLTVLHLN  300
VTTTADHLAL YSLSLKMEDE CRLSPSVDDI AAAVNEILAD ISDECARGGP GH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110122RRKAAASEAARRR
2110125RRKAAASEAARRRRRR
3120125RRRRRR
4140150RNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.50580.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G045883
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G045883_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381060.0BT038106.1 Zea mays full-length cDNA clone ZM_BFb0212B15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001137026.10.0uncharacterized protein LOC100217195
TrEMBLA0A3L6ETL00.0A0A3L6ETL0_MAIZE; Transcription factor bHLH70
TrEMBLB4FLW80.0B4FLW8_MAIZE; BHLH transcription factor
STRINGGRMZM2G045883_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-37bHLH family protein