PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G044902_P01 | ||||||||
Common Name | LOB14, LOC100193187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 329aa MW: 36067.4 Da PI: 12.2406 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.8 | 1.7e-14 | 2 | 62 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r++ GRMZM2G044902_P01 2 SCNGCRVLRKGCSEACVLRPCLqwidaAEAQGHATVFVAKFFGRAGLLSFISAVPDAQRPA 62 6*********************9998666789**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.41 | 1 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-11 | 2 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEACVLR PCLQWIDAAE AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PAYYCLPGLL WSMAPPRSPV PVAAVRGGGA DHQPGARRGG AAGHGELAPL PGRRRHRAAG 120 RRHRPAAGAW RRDGPPVRAP RRHRQARRRL VHLLHGEAGA EGRRRCRGAA RGGGGGVLRP 180 RAVPQQQPRV PAGDGGREEG PPPAARHAVH ELGRVRHDHG RRRQGARAAQ PFCLMKPPVD 240 DAGQTKPNHT RSGSLDWPPC DVMFCLDDLS RRPGVFSRRR RRQGRFSFVS GCGLRFYFWL 300 RSSGSRKETT SSSRSRPRSP VCVWAKMRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 123 | RHRAAGRRHR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34692 | 0.0 | endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G044902 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G044902_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035385 | 0.0 | BT035385.1 Zea mays full-length cDNA clone ZM_BFb0058L02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131814.1 | 0.0 | uncharacterized protein LOC100193187 | ||||
TrEMBL | B4FE47 | 0.0 | B4FE47_MAIZE; LOB domain-containing protein 38 | ||||
STRING | GRMZM2G044902_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-34 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G044902_P01 |
Entrez Gene | 100193187 |
Publications ? help Back to Top | |||
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