PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G044824_P01
Common NameMYB148, ZEAMMB73_875368, Zm.13889
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 376aa    MW: 38845.6 Da    PI: 7.25
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G044824_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+llvd+++  G g+W++ +++ g++R++k+c++rw +yl
  GRMZM2G044824_P01 15 KGPWTPEEDKLLVDYINGNGHGSWRRLPKHAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
2Myb_DNA-binding56.56.5e-1868113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  GRMZM2G044824_P01  68 RGRFTDDEEKLIIHLHSLLGNK-WSAIATKLP-GRTDNEIKNYWNTHL 113
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23765IPR009057Homeodomain-like
PROSITE profilePS5129417.8831062IPR017930Myb domain
SuperFamilySSF466897.11E-3012109IPR009057Homeodomain-like
SMARTSM007173.5E-141464IPR001005SANT/Myb domain
PfamPF002493.1E-161562IPR001005SANT/Myb domain
CDDcd001674.44E-111762No hitNo description
PROSITE profilePS5129427.20363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2666117IPR009057Homeodomain-like
SMARTSM007171.2E-1667115IPR001005SANT/Myb domain
PfamPF002492.7E-1668113IPR001005SANT/Myb domain
CDDcd001671.16E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI NGNGHGSWRR LPKHAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SAIATKLPGR TDNEIKNYWN THLRKKLLAM  120
GIDPVTHQRR TDLNLLAAGG FTNLLAAANL AAAAAGGGQA AGPGGPLAAA HASSCWDINA  180
LRLQADAAKY QLLEGLVRVL TAPAAPTVDL MSLLAAANNG GAPSGGGGHQ QLLAGVDQST  240
ASRVVQQYDG MLSLPALTSA VPAVTQGMPS SSAYSLSGLL NGFSGGAGTT AAFAGDGLSS  300
TELGHSGATT GSNVTAAAMP PPLAAAAKGC SAGNGGATSS TPSPYEETPA SSPFDGLDSL  360
TLDFDPNNDS WRELLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30151177108B-MYB
1gv2_A3e-30151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-30151174105C-Myb DNA-Binding Domain
1msf_C3e-30151174105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G044824
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G044824_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276650.0KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659377.10.0transcription factor MYB2
SwissprotQ8GWP08e-77MYB39_ARATH; Transcription factor MYB39
TrEMBLK7V7T90.0K7V7T9_MAIZE; MYB transcription factor
STRINGGRMZM2G044824_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-75myb domain protein 93