PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G044322_P01
Common NameLOC100274454
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family EIL
Protein Properties Length: 532aa    MW: 58665.3 Da    PI: 5.2558
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G044322_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3350.92.6e-107813582264
                        XXXXXXXXXXXXXXXXXXXXXX..XXXXX...................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..................tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYg 75 
                        +lkkrmwkdq ll++l++r+ +  e++ +                     +  ++ ++ ++rrk+m raQDg++++Mlk+me+cna+GfvYg
  GRMZM2G044322_P01  81 DLKKRMWKDQLLLMKLEGRSGRDREAQLPLhlhpfaddhpatasallqQAKDHQESPESRYRRKAMLRAQDGVIRHMLKMMEACNARGFVYG 172
                        8********************999888887888888888777777753333334488999******************************** PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT- CS
               EIN3  76 iipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekg 167
                         + e+g pv+g+sdsLr+WWk++v f+r+gp a+s  +a+    + ++  + ++ s  h l+++qD+tlgSLLsal+qhc+ppqr+fpl++g
  GRMZM2G044322_P01 173 VVNESGVPVSGSSDSLRGWWKDEVGFERAGPLALSVAAAA----GLDDPGSPMAASFLHGLHDIQDSTLGSLLSALIQHCEPPQRSFPLDRG 260
                        ***********************************88443....33333444589************************************* PP

                        -HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS
               EIN3 168 vepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258
                        ++pPWWPtG+e+wwg++g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp+++++r+l++qsk+lq+kmsa++ +++++v+ qee++ +
  GRMZM2G044322_P01 261 LAPPWWPTGREAWWGTQGeAQAHQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQMRKLVWQSKRLQHKMSARDADTWSKVITQEEALDR 352
                        ******************9999******************************************************************9875 PP

                        -XXXXX CS
               EIN3 259 tvsahs 264
                        + +   
  GRMZM2G044322_P01 353 HAQRAL 358
                        433322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.5E-11381348No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-63223355IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.62E-56226350IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MENYCESIDY YQKPSHPPNK PTTMDEDKDD NNDTGKGKAV LGAGPYHHHH HATAADQQEP  60
ESQEEFFSDS ESGSESIEIA DLKKRMWKDQ LLLMKLEGRS GRDREAQLPL HLHPFADDHP  120
ATASALLQQA KDHQESPESR YRRKAMLRAQ DGVIRHMLKM MEACNARGFV YGVVNESGVP  180
VSGSSDSLRG WWKDEVGFER AGPLALSVAA AAGLDDPGSP MAASFLHGLH DIQDSTLGSL  240
LSALIQHCEP PQRSFPLDRG LAPPWWPTGR EAWWGTQGEA QAHQGPPPYR KPHDLKKAWK  300
ISLLSAVIKH LSPRFDQMRK LVWQSKRLQH KMSARDADTW SKVITQEEAL DRHAQRALQI  360
TPLEEEEDDD GGPDTDAGGD SPMAAAHVEK RKRKVGGPGH TGSSGVDVGK ELLPLPDIDC  420
VPYADRSSIE ELMKLYYRCL QGTDDGEHEA KDAVAVRDGG QHNSSIAVAE TTQPPPVAHD  480
SMLQGLQRGG TTLPDGSAVH DDDMLSSLLG IADVVDMTDF PNSPIWQWGV YD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-472273524128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-472273524128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G044322
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G044322_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430830.0BT043083.1 Zea mays full-length cDNA clone ZM_BFc0091K23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142285.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ53e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLB4G1450.0B4G145_MAIZE; ETHYLENE INSENSITIVE 3-like 5 protein
STRINGGRMZM2G044322_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.13e-85EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]