PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G043854_P01
Common NameLOC103639337, ZEAMMB73_420285, Zm.41695
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 434aa    MW: 45864.8 Da    PI: 5.7576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G043854_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13217263354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  GRMZM2G043854_P01 217 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 263
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.04E-5217266No hitNo description
PfamPF000106.1E-11217263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.33E-5301350No hitNo description
Gene3DG3DSA:3.30.70.2607.0E-4301350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGGHGDHHHH HQEVGVLVDD DGDDEELEHQ GRACGGATSG GVVEQGVGDG GSAGHQDAAG  60
MAFEASISSV GSVSAATTMA PPQILCWPPP PQQQQLQQHH NLGGGHHQSP FFPLLQPPPP  120
PPPPPPQPPF FADLYARRAL QLAYDHHHSG GGGGPSTSSD PLGLYMGHPH HHQQHAGPGM  180
MMMMPPPFAS SSSPFGDFVG RMTAQEILDA KALAASKSHS EAERRRRERI NAHLARLRSL  240
LPNTTKTDKA SLLAEVIQHV KELKRQTSEI TEEACQLPTE SDELTVDASS DEDGRLVVRA  300
SLCCDDRADL LPDLVRALKA LRLRALKAEI TTLGGRVKNV LLITADDSSA AAGCHDDGGA  360
AAPDDDDDDR QEEAAPVSVS SQQHTVASIH EALRAVMERT AAASAAEDSG AAAAGLKRQR  420
TTSLSAILEN SRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227ERRRRE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G043854
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G043854_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864030.0BT086403.2 Zea mays full-length cDNA clone ZM_BFc0162N16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351797.10.0transcription factor bHLH30
RefseqXP_008660319.20.0transcription factor bHLH30
TrEMBLA0A1D6PEB20.0A0A1D6PEB2_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G043854_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-52bHLH family protein