PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G043250_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 687aa    MW: 78325.3 Da    PI: 6.6913
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G043250_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.2e-2294180290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  GRMZM2G043250_P01  94 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDQGEWKVIRLVSDHNHNLA 180
                        7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1994180IPR004330FAR1 DNA binding domain
PfamPF105511.8E-27276370IPR018289MULE transposase domain
PROSITE profilePS509669.569563595IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-4567592IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MSHVEPAAAG VDQVGEGTVV PHDNGVSGTG GDVATTEAQV AVAVSTSGDE RRGDYGDDAE  60
NEEEEEAATV QGSKEGTDEL LRKVVCSEEA AYKLYCDYGH RMGFSIRKGK QSYFTGTKRI  120
RTKDYFCSKE GLKEGEKLTD ANFNDPHTRT NCRAMVRFRV NDQGEWKVIR LVSDHNHNLA  180
RPEERHLLRS ARSLIAGRSS SVENQKQDLL LGYGAATKTL TIGTGDVQSL VSHLKSRANE  240
DGMFYWDVQL DRGGRMTNFF WRDGRSRTDY DCFCDVVVFD STYRLSKHNL ICAPFVGVNH  300
HWQTTMYGCA LLADESTSAF VWLFKSFLES MGNRHPQSIF TNLDQVVTKA VEEVFPNARH  360
RIAHWHIQKN AHSRLGALNV SKTFNKMFTK CIQGCDSEAE FEETWAQMLC EFKLQDNKWL  420
KKLYKLKQKW CSALNNCTFD GGIEYEPQCD SMSNMFNNVS DKLTSLCAIA VAVDKQTEDW  480
REKELDEDAR CFQRPPACII KYSDILNHAA KVYTHRIYKL FETDFLDGCG ATKFKELPCQ  540
DNNTYQFEMT MQGRGSRVCT VHFNMSMMQL SCSCSKFETM GLLCPHALKA LSIKNICKIP  600
ESYILKRWTK DAKKWVFNPK QYESSYQECM NDEAAYCNYV MRYAYDLVTK SQGQDALRKA  660
LWETLESGEK ELERYLENVT QHAPYAT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G043250
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G043250_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645783.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A194YQ740.0A0A194YQ74_SORBI; Uncharacterized protein
STRINGGRMZM2G043250_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1457144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-76FAR1-related sequence 5