PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042920_P02
Common NamebHLH7, LOC100280662, ZEAMMB73_284961
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 214aa    MW: 24001 Da    PI: 10.1343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042920_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-172469555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  GRMZM2G042920_P02 24 HNFSERRRRDRINEKLRALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 69
                       99************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-191776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.3431968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-202390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-142469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.07E-182473No hitNo description
SMARTSM003537.2E-182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004006anatomymesophyll cell
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEDGSSAPRR ATPPTRRSRS ADFHNFSERR RRDRINEKLR ALQELLPNCT KTDKVSMLDE  60
AIDYLKSLQL QLQMLVMGKG GGMAPVVPPE LQQYMHYITA DPAHQMMPPP LRPSAGQLQP  120
AAGRQFQITQ AAAAAANNDN DPQRRRQSNV ESDFLSQMQN LHPSDQPPHH HNFLRPPRLQ  180
LFTPEQRGGG GGLPTTSHNA GWISGRSSSY NFME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERRRRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042920
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042920_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343440.0BT034344.1 Zea mays full-length cDNA clone ZM_BFc0009F05 mRNA, complete cds.
GenBankBT0397930.0BT039793.1 Zea mays full-length cDNA clone ZM_BFc0045J14 mRNA, complete cds.
GenBankBT0643420.0BT064342.1 Zea mays full-length cDNA clone ZM_BFc0160O15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140849.11e-158uncharacterized protein LOC100272925
TrEMBLA0A1D6JEK11e-157A0A1D6JEK1_MAIZE; Transcription factor PIF4
STRINGGRMZM2G042920_P021e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-27phytochrome interacting factor 3