PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042893_P05
Common NameLOC100193646
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 382aa    MW: 41537.3 Da    PI: 7.8873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042893_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-1294137755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er RR+++N+++  Lr+++P+      +K++Ka+i++ A+ +I +Lq
  GRMZM2G042893_P05  94 DMERTRRRKLNERLYALRSVVPNI-----TKMDKASIVRDAIAHIEHLQ 137
                        69*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.54887136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1690151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1094137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-1494141No hitNo description
Gene3DG3DSA:4.10.280.107.0E-1595151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEADSMVAMG CGGFYWQSPP RFLLEPLDLA DIVDSSMYVP TNEADEPVSG LCSSNRPAED  60
YSSSAEGANS CSAAVVPSPP PPPGVTTTTT RNMDMERTRR RKLNERLYAL RSVVPNITKM  120
DKASIVRDAI AHIEHLQEQE RRLLAEISVL QSSDDGTAAA AAVKTEDAAA TGGAAYDVDS  180
VPWRKKPRAV PLPSVYFTDN PTSSISSSPP VRILEVQVSQ AGERVAVVSL WCSRGRDAVG  240
KICLALEPLR LRVVTATITA RGDTVFHTLF VEVIKQPANY SLPHDGNYCG CPCTCACLPE  300
KSASALANRW RHRGDVARDD VRNGAPLWLS SSSFRQKLGA GVDVGLEVSS VLADRRLVKY  360
VKFLRGKRAR DILYFVLLTV KD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239560.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042893
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042893_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359710.0BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132214.10.0uncharacterized protein LOC100193646
TrEMBLB4FFT30.0B4FFT3_MAIZE; Uncharacterized protein
STRINGGRMZM2G042893_P050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-36bHLH family protein