PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042893_P04
Common NameLOC100193646
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 263aa    MW: 28626.8 Da    PI: 8.8671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042893_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000532183955
                       TCHHHHHHHHHHHHHHH CS
                HLH 39 sKaeiLekAveYIksLq 55
                       +Ka+i++ A+ +I +Lq
  GRMZM2G042893_P04  2 DKASIVRDAIAHIEHLQ 18
                       8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-4132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDKASIVRDA IAHIEHLQEQ ERRLLAEISV LQSSDDGTAA AAAVKTEDAA ATGGAAYDVD  60
SVPWRKKPRA VPLPSVYFTD NPTSSISSSP PVRILEVQVS QAGERVAVVS LWCSRGRDAV  120
GKICLALEPL RLRVVTATIT ARGDTVFHTL FVEVIKQPAN YSLPHDGNYC GCPCTCACLP  180
EKSASALANR WRHRGDVARD DVRNGAPLWL SSSSFRQKLG AGVDVGLEVS SVLADRRLVK  240
YVKFLRGKRA RDILYFVLLT VKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239560.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042893
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042893_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359710.0BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132214.10.0uncharacterized protein LOC100193646
TrEMBLB4FFT30.0B4FFT3_MAIZE; Uncharacterized protein
STRINGGRMZM2G042893_P050.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.25e-21bHLH family protein