PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G042893_P03 | ||||||||
Common Name | LOC100193646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 28626.8 Da PI: 8.8671 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00053 | 2 | 18 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i++ A+ +I +Lq GRMZM2G042893_P03 2 DKASIVRDAIAHIEHLQ 18 8***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-4 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDKASIVRDA IAHIEHLQEQ ERRLLAEISV LQSSDDGTAA AAAVKTEDAA ATGGAAYDVD 60 SVPWRKKPRA VPLPSVYFTD NPTSSISSSP PVRILEVQVS QAGERVAVVS LWCSRGRDAV 120 GKICLALEPL RLRVVTATIT ARGDTVFHTL FVEVIKQPAN YSLPHDGNYC GCPCTCACLP 180 EKSASALANR WRHRGDVARD DVRNGAPLWL SSSSFRQKLG AGVDVGLEVS SVLADRRLVK 240 YVKFLRGKRA RDILYFVLLT VKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23956 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G042893 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G042893_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035971 | 0.0 | BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132214.1 | 0.0 | uncharacterized protein LOC100193646 | ||||
TrEMBL | B4FFT3 | 0.0 | B4FFT3_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G042893_P05 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 5e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G042893_P03 |