PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G042893_P02 | ||||||||
Common Name | LOC100193646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 274aa MW: 29600.6 Da PI: 5.0142 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.7e-13 | 93 | 136 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ Lr+++P+ +K++Ka+i++ A+ +I +Lq GRMZM2G042893_P02 93 DMERTRRRKLNERLYALRSVVPNI-----TKMDKASIVRDAIAHIEHLQ 136 69*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.548 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 89 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-15 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.31E-15 | 93 | 140 | No hit | No description |
Pfam | PF00010 | 1.6E-10 | 93 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-15 | 94 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEADSMVAMG CGGFYWQSPP RFLLEPLDLA DIVDSMYVPT NEADEPVSGL CSSNRPAEDY 60 SSSAEGANSC SAAVVPSPPP PPGVTTTTTR NMDMERTRRR KLNERLYALR SVVPNITKMD 120 KASIVRDAIA HIEHLQEQER RLLAEISVLQ SSDDGTAAAA AVKTEDAAAT GGAAYDVDSV 180 PWRKKPRAVP LPSVYFTDNP TSSISSSPPV RILEVQVSQA GERVAVVSLW CSRGRDAVGK 240 ICLALEPLRL RVVTATITAR GDTVFHTLFV ELLN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23956 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G042893 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G042893_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035971 | 0.0 | BT035971.1 Zea mays full-length cDNA clone ZM_BFb0090D10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132214.1 | 1e-173 | uncharacterized protein LOC100193646 | ||||
Refseq | XP_008667198.1 | 1e-174 | uncharacterized protein LOC100193646 isoform X3 | ||||
TrEMBL | A0A3L6G430 | 1e-176 | A0A3L6G430_MAIZE; Transcription factor bHLH35 | ||||
STRING | GRMZM2G042893_P05 | 1e-172 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 2e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G042893_P02 |