PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G042756_P01 | ||||||||
Common Name | LOC100281239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24031.7 Da PI: 5.1594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.3e-17 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g r+r++lg+f tae+Aa+a++ a+++l+g GRMZM2G042756_P01 48 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 98 68****9666.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 48 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-27 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 49 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 49 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.483 | 49 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.24E-19 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 5.7E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDWAYYGSGY STPASGGGGG DEDAYMTVSS APPKRRAGRT KFKETRHPVY KGVRSRNPGR 60 WVCEVREPHG RQRIWLGTFE TAEMAARAHD VAALALRGRA ACLNFADSPR RLRVPAQGAG 120 HDEIRRAAVE AAELFRPQPG ERNVGGSEAA AEAAAAAPCA MGSGDLGGGE FPYYPVDDGL 180 EFEMRGYLDM AQGMLIDPPQ PAAGQSAWIE DEYECEVSLW SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 47 | 105 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1524 | 0.0 | aerial organ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G042756 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00452 | DAP | Transfer from AT4G25470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G042756_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956044 | 0.0 | EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147630.1 | 1e-161 | dehydration-responsive element-binding protein 1D | ||||
Swissprot | A2XWL6 | 1e-107 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-107 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | B6STH9 | 1e-160 | B6STH9_MAIZE; Dehydration-responsive element-binding protein 1D | ||||
STRING | GRMZM2G042756_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-38 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G042756_P01 |
Entrez Gene | 100281239 |
Publications ? help Back to Top | |||
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