PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042666_P01
Common NameAI987507
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 518aa    MW: 54014.1 Da    PI: 9.5943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042666_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055779123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  GRMZM2G042666_P01 57 FVCEVCNKGFQREQNLQLHRRGH 79
                       89*******************88 PP
2zf-C2H212.70.00038133155123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  GRMZM2G042666_P01 133 WKCDKCSKRYAVQSDWKAHSKTC 155
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-75679No hitNo description
Gene3DG3DSA:3.30.160.607.0E-65679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0945779IPR007087Zinc finger, C2H2
SMARTSM003550.00415779IPR015880Zinc finger, C2H2-like
PfamPF121713.3E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035530098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.27E-7128153No hitNo description
SMARTSM00355140133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MQPQQGSSSS LQQNSTAAPG AAAVPPPKKK RNQPGNPNPD AEVIALSPRT LLATNRFVCE  60
VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP REARRRVYLC PEPTCVHHDP SRALGDLTGI  120
KKHYCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF  180
CDALARESAQ MPPLGAGLYV GPGSMSLGLS QIHGFADQAQ SSSAAAAPQF DHIMPSSSGS  240
SSMFRSQASA SSPSYFLGGS APPAAAQDFS EDGSQGSQGP LLHGKAHFHG LMMQLPEQQH  300
QPGSSNAAVG ANGSNILNLG FFSAGNSGGT SGSLQDARIA IQDQFNLSGS GSGSAEHGNN  360
VMVASIGSHL GRGFPSLYSS SPSAGMAQNS ATALLMKAAQ MGSTTSSTTH NNHNGPTTTS  420
TLLRATGFSG ATGSGQLGTT GGRAAAGEEG AASHEAHFHE LIMNSLAGGG FSGTAGFGGG  480
VDDGKLSTRD FLGVGRGAAT MAPPGLHMGA LDPAQQMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34129194368Zinc finger protein JACKDAW
5b3h_F4e-34129194368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.174150.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042666
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042666_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105282.20.0uncharacterized protein LOC542198
RefseqXP_023156336.10.0uncharacterized protein LOC542198 isoform X1
TrEMBLQ5UDB70.0Q5UDB7_MAIZE; INDETERMINATE-related protein 7
STRINGGRMZM2G042666_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-110indeterminate(ID)-domain 4