PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042407_P02
Common NameLOC100502392, SRS2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 302aa    MW: 31519.6 Da    PI: 7.912
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042407_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702200.55.2e-62972373153
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklss 93 
                        +gt+sCqdCGnqakkdC+h+RCRtCCk+rgfdC thvkstWvpaakrrerqqq + +            skr+r+    ++ s++++t++ss
  GRMZM2G042407_P02  97 AGTISCQDCGNQAKKDCVHMRCRTCCKTRGFDCPTHVKSTWVPAAKRRERQQQVTEP------------SKRHRDAtVGAQPSSTTATTTSS 176
                        6899**********************************************9998765............34444441234445556666666 PP

             DUF702  94 aesk.keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        +e++ + + ++++P+evssea+frcvr++ vd+  +e+aYqt+v+i+GhvfkGiL+d G++
  GRMZM2G042407_P02 177 GEQQqMAVAAERFPREVSSEALFRCVRLGPVDEPGAEVAYQTSVNIAGHVFKGILHDVGPD 237
                        665505566778***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-5999237IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.2E-27101143IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.3E-21188236IPR006511Lateral Root Primordium type 1, C-terminal
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGFPLGGGG HGRGDHHHHH HPHVNPSSAS GSDSATAAAY LYTAAAPRGG FQLWPHHPAE  60
EHHHHFYAPN IIRFADDPFA GSSRGGRGSD AFVAAGAGTI SCQDCGNQAK KDCVHMRCRT  120
CCKTRGFDCP THVKSTWVPA AKRRERQQQV TEPSKRHRDA TVGAQPSSTT ATTTSSGEQQ  180
QMAVAAERFP REVSSEALFR CVRLGPVDEP GAEVAYQTSV NIAGHVFKGI LHDVGPDPSS  240
SVAAGGGGFR HATDGSSPGT AGEGSVAGAG PVSSSAVVMD PYPTPTTPGP YGGSHFFHGH  300
PR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1000150.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042407
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042407_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879890.0BT087989.1 Zea mays full-length cDNA clone ZM_BFb0341I03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183799.10.0uncharacterized protein LOC100502392
TrEMBLC4JAZ20.0C4JAZ2_MAIZE; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G042407_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.12e-48Lateral root primordium (LRP) protein-related