PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G042278_P01 | ||||||||
Common Name | IDP64 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Nin-like | ||||||||
Protein Properties | Length: 786aa MW: 82888.6 Da PI: 6.2867 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 87.2 | 1.4e-27 | 539 | 588 | 2 | 51 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rk+++ GRMZM2G042278_P01 539 EKTVSLEELQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPFRKLAK 588 799********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 4.2E-4 | 148 | 230 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 18.144 | 525 | 609 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.2E-25 | 541 | 588 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.6E-18 | 680 | 748 | No hit | No description |
PROSITE profile | PS51745 | 17.143 | 681 | 774 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.3E-17 | 681 | 774 | IPR000270 | PB1 domain |
Pfam | PF00564 | 7.7E-13 | 682 | 751 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.9E-22 | 682 | 748 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MDGVLQRFDV DLLLDGHGHG DDSLCEERRS SSSIRLSDRW LLMAVSVGGS VCVRAGGSER 60 RSASGGGAQD KAGIDGAVKE RIARALRIYK DAAGLDGGAL VQVWAPARDG GRRVLATRGQ 120 PFVLPPPRCH RLFQYRTVSL AHAFPVGGAA VPGERGLPGR VFDAGEPEWT PNVQYYGTGE 180 YARISYALIY DIQAALALPI LDPATGACLA VLELVTTSPR LHFAADVDRL SEALQAVALR 240 GSEICRRPAP EACNDDGAAA QVAMSEVADI LNQVGEAHKL PLAQAWTRCR RCSTDTEHAS 300 LTAAGAPFYL TGADPNPNLL GFHEACVEHH LRLRSGRGGL VEEAAAARRP LFCADVTKYS 360 MDAYPLAHHA RFCELSGCLA VCARLRRGGD ESMDTDGGGG AGWDECVLEF FLPPDCRDGA 420 AQKAAAGAVA ATIMERSGGG GLKAVVISGL QDLVFDIAAD GECVLRPDPV AMADDVPQLE 480 LNGHGGDEWD SDEEGLHLVV AMGTTTTDIE ASKMHHDEHH GGEDPRSQVG KKAAKRKGEK 540 TVSLEELQRY FSGSLKDAAK SLGVCPTTMK RICRQHGISR WPFRKLAKAN RSLDKIKRVF 600 ESVQGSSQAM AAAPAPPPAA AAASYSQQAP AVAAAPRAPA LSPCLSSAPR VASSQASCQA 660 PPPPLKEAAW HKPLRGGDAS VVTVKASYRG DIVRFRVPSS AGVATVKGEV AMRLGLAPGE 720 FDVKYLDDDN EWVLLSCDAD FQECLDVIPA LSGASASSGS GTAQPVVRLM VHEVAEVHGS 780 SCGSSD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4170 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G042278 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G042278_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068798 | 0.0 | BT068798.1 Zea mays full-length cDNA clone ZM_BFc0004I06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644135.1 | 0.0 | uncharacterized protein LOC100383982 isoform X1 | ||||
TrEMBL | A0A1D6GZW1 | 0.0 | A0A1D6GZW1_MAIZE; Protein NLP6 | ||||
STRING | GRMZM2G042278_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 1e-112 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G042278_P01 |