PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G042278_P01
Common NameIDP64
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 786aa    MW: 82888.6 Da    PI: 6.2867
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G042278_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.21.4e-27539588251
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                        ek++sle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rk+++
  GRMZM2G042278_P01 539 EKTVSLEELQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPFRKLAK 588
                        799********************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.404.2E-4148230IPR029016GAF domain-like
PROSITE profilePS5151918.144525609IPR003035RWP-RK domain
PfamPF020424.2E-25541588IPR003035RWP-RK domain
SuperFamilySSF542773.6E-18680748No hitNo description
PROSITE profilePS5174517.143681774IPR000270PB1 domain
SMARTSM006662.3E-17681774IPR000270PB1 domain
PfamPF005647.7E-13682751IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.9E-22682748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MDGVLQRFDV DLLLDGHGHG DDSLCEERRS SSSIRLSDRW LLMAVSVGGS VCVRAGGSER  60
RSASGGGAQD KAGIDGAVKE RIARALRIYK DAAGLDGGAL VQVWAPARDG GRRVLATRGQ  120
PFVLPPPRCH RLFQYRTVSL AHAFPVGGAA VPGERGLPGR VFDAGEPEWT PNVQYYGTGE  180
YARISYALIY DIQAALALPI LDPATGACLA VLELVTTSPR LHFAADVDRL SEALQAVALR  240
GSEICRRPAP EACNDDGAAA QVAMSEVADI LNQVGEAHKL PLAQAWTRCR RCSTDTEHAS  300
LTAAGAPFYL TGADPNPNLL GFHEACVEHH LRLRSGRGGL VEEAAAARRP LFCADVTKYS  360
MDAYPLAHHA RFCELSGCLA VCARLRRGGD ESMDTDGGGG AGWDECVLEF FLPPDCRDGA  420
AQKAAAGAVA ATIMERSGGG GLKAVVISGL QDLVFDIAAD GECVLRPDPV AMADDVPQLE  480
LNGHGGDEWD SDEEGLHLVV AMGTTTTDIE ASKMHHDEHH GGEDPRSQVG KKAAKRKGEK  540
TVSLEELQRY FSGSLKDAAK SLGVCPTTMK RICRQHGISR WPFRKLAKAN RSLDKIKRVF  600
ESVQGSSQAM AAAPAPPPAA AAASYSQQAP AVAAAPRAPA LSPCLSSAPR VASSQASCQA  660
PPPPLKEAAW HKPLRGGDAS VVTVKASYRG DIVRFRVPSS AGVATVKGEV AMRLGLAPGE  720
FDVKYLDDDN EWVLLSCDAD FQECLDVIPA LSGASASSGS GTAQPVVRLM VHEVAEVHGS  780
SCGSSD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41700.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G042278
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G042278_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687980.0BT068798.1 Zea mays full-length cDNA clone ZM_BFc0004I06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644135.10.0uncharacterized protein LOC100383982 isoform X1
TrEMBLA0A1D6GZW10.0A0A1D6GZW1_MAIZE; Protein NLP6
STRINGGRMZM2G042278_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-112Nin-like family protein