PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G042218_P01 | ||||||||
Common Name | LOC100273698, ZEAMMB73_862004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 338aa MW: 36139.2 Da PI: 4.4946 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.6 | 1.2e-37 | 32 | 89 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprCds ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+r+n++++ GRMZM2G042218_P01 32 APSCPRCDSPNTKFCYYNNYSLTQPRYFCKGCRRYWTRGGSLRNVPVGGGCRRNRRAK 89 568***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-33 | 14 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-31 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MLSSHHEAML PYAPPSLLVD RRYRQQQAGE AAPSCPRCDS PNTKFCYYNN YSLTQPRYFC 60 KGCRRYWTRG GSLRNVPVGG GCRRNRRAKS SVRSAFGGGH RFVQGPVVRP DLVLEGMVSN 120 SNPAHEMPAA ADGSTIDLAM LYAKFLDHHP PAPEEGLGSA VTPELAVALA GPERLDEALF 180 DTFSDLSPPA GVLAAPPVQF DPPCGHDDGF DDWSSGGPVS SAGPSSTAST ATATTCIPPC 240 ADVSVHAAFG EEFNFAKDQS CLLFDSLGLP TDDVGDLSSS SWRSIVPGLS TLEDTEYDLL 300 DSSFPDDALS LHEGMVSGTD HDCWSVVDCQ GLEALYMP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 86 | RNVPVGGGCRRNRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G042218 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G042218_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041655 | 0.0 | BT041655.1 Zea mays full-length cDNA clone ZM_BFb0026B04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141582.1 | 0.0 | Dof zinc finger protein DOF1.2 | ||||
TrEMBL | B4FX17 | 0.0 | B4FX17_MAIZE; Dof zinc finger protein DOF1.2 | ||||
TrEMBL | K0D9N5 | 0.0 | K0D9N5_MAIZE; DOF38 C2C2-DOF type transcription factor (Fragment) | ||||
STRING | GRMZM2G042218_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 1e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G042218_P01 |
Entrez Gene | 100273698 |