PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041991_P01
Common NameCOL12, LOC103627680, Zm.145712
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 496aa    MW: 53771.5 Da    PI: 7.0722
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041991_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.6e-081657338
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  GRMZM2G041991_P01 16 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 57
                       578*****************************6566777776 PP
2CCT67.63.4e-23400443144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  GRMZM2G041991_P01 400 REARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 443
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681461IPR000315B-box-type zinc finger
PfamPF006431.5E-61758IPR000315B-box-type zinc finger
CDDcd000211.70E-81961No hitNo description
PROSITE profilePS5101716.033400442IPR010402CCT domain
PfamPF062036.0E-18400442IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSSSKHAAGA VGGKAARACD SCLRRRARWY CAADDAFLCQ GCDASVHSAN PLARRHERLR  60
LRPTDPHSTT LEAGVATATW KKRQQQVAPA WSKRKARTRR PHVKSVGELL SRKLVVVPEV  120
SPIESSEERK AEEEEEEEEG QLLYCVPTFD RALAELCSPP PPVDDPTASS CCRDDVDGAV  180
ENNTKAPPVV VAESPVQQLP DSFAGFGPTD AELREFAADM EALLGQGLDD GNELDRSFYM  240
ESLGLMAQQA EDVGRIKMEP NGIVSSRSRG EGAPGFGPTE MKPEASSAAA EVLDTDFNCC  300
SPTVMMDNED EDSFEQKASA SNAAAAAAGT QFLKRSLDLS LNYEAIIESW GSSPWTDGQR  360
PSVQLDDFWP HAHLTGWMAG GGRLGGEAAV TPRLGMGGGR EARVTRYREK RRTRLFAKKI  420
RYEVRKLNAE KRPRMKGRFV KRPAAAAGGG GEELPLPPRA PSPSLPIEVA RVAAQSPCGV  480
PIGVRPRPCP RECRGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410426RRTRLFAKKIRYEVRKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041991
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041991_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280490.0KJ728049.1 Zea mays clone pUT6195 C2C2-CO-like transcription factor (COL12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646195.10.0zinc finger protein CONSTANS-LIKE 16 isoform X2
TrEMBLA0A060D2L10.0A0A060D2L1_MAIZE; C2C2-CO-like transcription factor (Fragment)
STRINGGRMZM2G041991_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-49B-box type zinc finger protein with CCT domain