PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041746_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 369aa    MW: 41425.9 Da    PI: 6.9304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041746_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.45e-52101401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++++ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  GRMZM2G041746_P02  10 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREIDLNQLEPWDLKErcRIGTgHQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100
                        69****************************.9***************953544443666********************************* PP

                NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++    ++ +gl+ktLvfy grap+g+ktdW+mheyrl
  GRMZM2G041746_P02 101 KAIFLGnASRRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 140
                        ****9756778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-587163IPR003441NAC domain
PROSITE profilePS5100558.3610163IPR003441NAC domain
PfamPF023653.0E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MHPGGGPLSV PPGFRFHPTD EELLYYYLRK KVSYEPIDLD VIREIDLNQL EPWDLKERCR  60
IGTGHQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNASR RIGLRKTLVF  120
YIGRAPHGKK TDWIMHEYRL DQENVEIQGL QEDGWVVCRV FKKKSYHQRG LNPAEMAAAL  180
DDDELQPFPV PIPGSSLQPT EHKTNPTHLM QYDYPSFDPS MQLPQLMSDD QEQEQPVRPT  240
LLPGHPGVAM ASMSSLNIEC SQNLTKLTSN GSDEMLHVGH GGGAGGGVVV DRFAGTTTDW  300
SILDKLLASH QNLDRLFHGK VVTTASASPM AVPVYHQQLM ELGGSSSSLQ RLPLQYLGGE  360
TADLLRYPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51816915171NO APICAL MERISTEM PROTEIN
1ut4_B5e-51816915171NO APICAL MERISTEM PROTEIN
1ut7_A5e-51816915171NO APICAL MERISTEM PROTEIN
1ut7_B5e-51816915171NO APICAL MERISTEM PROTEIN
3swm_A6e-51816918174NAC domain-containing protein 19
3swm_B6e-51816918174NAC domain-containing protein 19
3swm_C6e-51816918174NAC domain-containing protein 19
3swm_D6e-51816918174NAC domain-containing protein 19
3swp_A6e-51816918174NAC domain-containing protein 19
3swp_B6e-51816918174NAC domain-containing protein 19
3swp_C6e-51816918174NAC domain-containing protein 19
3swp_D6e-51816918174NAC domain-containing protein 19
4dul_A5e-51816915171NAC domain-containing protein 19
4dul_B5e-51816915171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041746
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041746_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8339640.0AJ833964.1 Zea mays partial mRNA for hypothetical protein (nac5 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288402.10.0NAC domain-containing protein 76-like
RefseqXP_008649165.10.0NAC domain-containing protein 76-like isoform X1
SwissprotQ5Z6B61e-116NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLQ5F4H40.0Q5F4H4_MAIZE; Uncharacterized protein nac5 (Fragment)
STRINGGRMZM2G041746_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-87NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]