PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041746_P01
Common NameLOC103629850
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 366aa    MW: 41127.6 Da    PI: 6.9304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041746_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.9e-52101401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++++ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  GRMZM2G041746_P01  10 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREIDLNQLEPWDLKErcRIGTgHQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100
                        69****************************.9***************953544443666********************************* PP

                NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++    ++ +gl+ktLvfy grap+g+ktdW+mheyrl
  GRMZM2G041746_P01 101 KAIFLGnASRRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 140
                        ****9756778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-587160IPR003441NAC domain
PROSITE profilePS5100558.3610160IPR003441NAC domain
PfamPF023652.9E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MHPGGGPLSV PPGFRFHPTD EELLYYYLRK KVSYEPIDLD VIREIDLNQL EPWDLKERCR  60
IGTGHQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNASR RIGLRKTLVF  120
YIGRAPHGKK TDWIMHEYRL DQENVEIQED GWVVCRVFKK KSYHQRGLNP AEMAAALDDD  180
ELQPFPVPIP GSSLQPTEHK TNPTHLMQYD YPSFDPSMQL PQLMSDDQEQ EQPVRPTLLP  240
GHPGVAMASM SSLNIECSQN LTKLTSNGSD EMLHVGHGGG AGGGVVVDRF AGTTTDWSIL  300
DKLLASHQNL DRLFHGKVVT TASASPMAVP VYHQQLMELG GSSSSLQRLP LQYLGGETAD  360
LLRYPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51816615171NO APICAL MERISTEM PROTEIN
1ut4_B5e-51816615171NO APICAL MERISTEM PROTEIN
1ut7_A5e-51816615171NO APICAL MERISTEM PROTEIN
1ut7_B5e-51816615171NO APICAL MERISTEM PROTEIN
3swm_A6e-51816618174NAC domain-containing protein 19
3swm_B6e-51816618174NAC domain-containing protein 19
3swm_C6e-51816618174NAC domain-containing protein 19
3swm_D6e-51816618174NAC domain-containing protein 19
3swp_A6e-51816618174NAC domain-containing protein 19
3swp_B6e-51816618174NAC domain-containing protein 19
3swp_C6e-51816618174NAC domain-containing protein 19
3swp_D6e-51816618174NAC domain-containing protein 19
4dul_A5e-51816615171NAC domain-containing protein 19
4dul_B5e-51816615171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041746
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041746_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388160.0BT038816.1 Zea mays full-length cDNA clone ZM_BFb0329L19 mRNA, complete cds.
GenBankEU9770780.0EU977078.1 Zea mays clone 998381 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288402.10.0NAC domain-containing protein 76-like
RefseqXP_008649165.10.0NAC domain-containing protein 76-like isoform X1
SwissprotQ5Z6B61e-118NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLB4FNX80.0B4FNX8_MAIZE; NAC domain-containing protein 76
TrEMBLK0DCP40.0K0DCP4_MAIZE; NAC116 NAC type transcription factor (Fragment)
STRINGGRMZM2G041746_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-89NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zimmermann R,Werr W
    Pattern formation in the monocot embryo as revealed by NAM and CUC3 orthologues from Zea mays L.
    Plant Mol. Biol., 2005. 58(5): p. 669-85
    [PMID:16158242]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]