PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G041223_P01 | ||||||||
Common Name | Zm.25395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 381aa MW: 40728.5 Da PI: 8.5676 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 7.8e-25 | 113 | 157 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ GRMZM2G041223_P01 113 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 157 79****************************************996 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 58 | 93 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll+++++ GRMZM2G041223_P01 58 LFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPLRR 93 6********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-10 | 57 | 93 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.013 | 58 | 93 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.3E-14 | 59 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 113 | 157 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 114 | 156 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAMPFASLSP AADHRPSSLL PYCRAAPLSA VGEDAAAQAQ QQQQHAMSGR WAARPPALFT 60 AAQYEELEHQ ALIYKYLVAG VPVPPDLLLP LRRGFVYHQP ALGYGPYFGK KVDPEPGRCR 120 RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVEAQLV PPPHAQQQQQ QQAPAPTAGF 180 QSHPMYPSIL AGNGGGGGGV GGGAGGGGTF GLGPTSQLHM DSAAAYATAA GGGSKDLRYS 240 AYGVKSLSDE HSQLLSGGGG MDASMDNSWR LLPSQTAATF QATSYPLFGA LSGLDESTIA 300 SLPKTQREPL SFFGSDFVTP KQENQTLRPF FDEWPKSRDS WPELNEDNSL GSSATQLSIS 360 IPMAPSDFNT SSRSPNGIPS R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25395 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G041223 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G041223_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF515845 | 0.0 | EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106025.2 | 0.0 | putative growth-regulating factor 6 | ||||
Swissprot | Q6AWY6 | 1e-176 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A3L6G1Z3 | 0.0 | A0A3L6G1Z3_MAIZE; Growth-regulating factor 3 | ||||
STRING | GRMZM2G041223_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-37 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G041223_P01 |