PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G041223_P01
Common NameZm.25395
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 381aa    MW: 40728.5 Da    PI: 8.5676
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G041223_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.8e-25113157145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GRMZM2G041223_P01 113 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 157
                        79****************************************996 PP

2QLQ58.12.7e-205893237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll+++++
  GRMZM2G041223_P01 58 LFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPLRR 93
                       6********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-105793IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0135893IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-145991IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517113157IPR014977WRC domain
PfamPF088793.9E-21114156IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSSLL PYCRAAPLSA VGEDAAAQAQ QQQQHAMSGR WAARPPALFT  60
AAQYEELEHQ ALIYKYLVAG VPVPPDLLLP LRRGFVYHQP ALGYGPYFGK KVDPEPGRCR  120
RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVEAQLV PPPHAQQQQQ QQAPAPTAGF  180
QSHPMYPSIL AGNGGGGGGV GGGAGGGGTF GLGPTSQLHM DSAAAYATAA GGGSKDLRYS  240
AYGVKSLSDE HSQLLSGGGG MDASMDNSWR LLPSQTAATF QATSYPLFGA LSGLDESTIA  300
SLPKTQREPL SFFGSDFVTP KQENQTLRPF FDEWPKSRDS WPELNEDNSL GSSATQLSIS  360
IPMAPSDFNT SSRSPNGIPS R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.253950.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G041223
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G041223_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158450.0EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106025.20.0putative growth-regulating factor 6
SwissprotQ6AWY61e-176GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A3L6G1Z30.0A0A3L6G1Z3_MAIZE; Growth-regulating factor 3
STRINGGRMZM2G041223_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-37growth-regulating factor 5