PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G040349_P02 | ||||||||
Common Name | LOC100194182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 300aa MW: 32759.3 Da PI: 9.1105 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106 | 3.2e-33 | 154 | 210 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rakle+++k+ k+rkpylheSRh+hA++R+RgsgGrF GRMZM2G040349_P02 154 EEPIYVNAKQYHAILRRRQTRAKLEAQNKM-VKNRKPYLHESRHRHAMKRARGSGGRF 210 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-37 | 152 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.024 | 153 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.6E-29 | 155 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-25 | 156 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 158 | 178 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-25 | 187 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MPVILREMED HSVHPMSKSN HGSLSGNGYE MKHSGHKVCD RDSSSESDRS HQEASAASES 60 SPNEHTSTQS DNDEDHGKDN QDTMKPVLSL GKEGSAFLAP KLHYSPSFAC IPYTSDAYYS 120 AVGVLTGYPP HAIVHPQQND TTNTPGMLPV EPAEEPIYVN AKQYHAILRR RQTRAKLEAQ 180 NKMVKNRKPY LHESRHRHAM KRARGSGGRF LNTKQLQEQN QQYQASSGSL CSKIIANSII 240 SQSGPTCTPS SGTAGASTAG QDRSCLPSVG FRPTTNFSDQ GRGGLKLAVI GMQQRVSTIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-24 | 154 | 233 | 2 | 78 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 203 | RHRHAMKRAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85446 | 0.0 | ear| embryo| endosperm| meristem| pedicel| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G040349 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G040349_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036648 | 0.0 | BT036648.1 Zea mays full-length cDNA clone ZM_BFb0127N08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132701.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | NP_001345836.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_008667276.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X2 | ||||
Refseq | XP_008667277.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X2 | ||||
TrEMBL | B4FHR0 | 0.0 | B4FHR0_MAIZE; Nuclear transcription factor Y subunit A-3 | ||||
STRING | GRMZM2G040349_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-37 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G040349_P02 |
Entrez Gene | 100194182 |
Publications ? help Back to Top | |||
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