PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G039889_P01 | ||||||||
Common Name | ZEAMMB73_943527, Zm.67905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 156aa MW: 17192.6 Da PI: 8.1358 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.6e-06 | 21 | 46 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ ++ + Ck+ ++CkF+H++ GRMZM2G039889_P01 21 PGEPDCP-YLLNNRCKFKSKCKFNHPK 46 57899**.7777*************96 PP | |||||||
2 | zf-CCCH | 35.1 | 2.3e-11 | 74 | 98 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+a+tG Ck+G+ CkF+H++ GRMZM2G039889_P01 74 EPICVFYAKTGKCKFGAICKFNHPK 98 799********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.263 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 76 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSARDDPRKA PNVEDSYPER PGEPDCPYLL NNRCKFKSKC KFNHPKDMVN ALGTGTNNES 60 LIADSAVLPV RPSEPICVFY AKTGKCKFGA ICKFNHPKDI KTSPLIAKET IYTATTDAAD 120 APTEACNAKG LPIRQGEVDC SFYMKTGRYL LHGQDC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67905 | 0.0 | ear| embryo| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G039889 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G039889_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064944 | 0.0 | BT064944.1 Zea mays full-length cDNA clone ZM_BFc0042H04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346414.1 | 1e-103 | uncharacterized protein LOC100216717 | ||||
Swissprot | Q5ZDJ6 | 5e-50 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | C0P9H5 | 1e-103 | C0P9H5_MAIZE; Uncharacterized protein | ||||
TrEMBL | K7UZM0 | 1e-102 | K7UZM0_MAIZE; Zinc finger CCCH domain-containing protein 37 | ||||
STRING | GRMZM2G039889_P06 | 5e-97 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-37 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G039889_P01 |
Publications ? help Back to Top | |||
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