PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039870_P01
Common NameEREB112
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 275aa    MW: 29904 Da    PI: 8.3009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039870_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19107156255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a++ a+ +l+g
  GRMZM2G039870_P01 107 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDGAAFRLRG 156
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-31106166No hitNo description
SuperFamilySSF541712.22E-22107165IPR016177DNA-binding domain
SMARTSM003801.5E-36107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-32107165IPR001471AP2/ERF domain
PROSITE profilePS5103223.314107164IPR001471AP2/ERF domain
PfamPF008474.9E-14108156IPR001471AP2/ERF domain
PRINTSPR003674.9E-11108119IPR001471AP2/ERF domain
PRINTSPR003674.9E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTTAAMDRHW RRLQATPPPL GAVQYYRELI HSLDTPVQAA PIMVDTEPGQ AMAIVGASRS  60
KCYHLITPAQ AAYYYRVVGG RLGSAPRLMK PYRCLGAPAP STTTTKLYRG VRQRHWGKWV  120
AEIRLPRNRT RLWLGTYDTA EEAALAYDGA AFRLRGDAAR LNFPELRLGG THLAPPLHPT  180
VDAKLQAVTT SAPAAPALPR PESLDIESET STTTTATAYG TGLCPSSTGS SSLAKTAPLP  240
DMQELDFSEV PWDEGDGVAL CKYPSLEIDW NAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19106164463ATERF1
3gcc_A1e-19106164463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039870
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039870_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275150.0KJ727515.1 Zea mays clone pUT5374 AP2-EREBP transcription factor (EREB112) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666300.20.0ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-49RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A060CWY70.0A0A060CWY7_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G039870_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-41related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]