PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039828_P01
Common NameLOC100192956
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 196aa    MW: 20615.5 Da    PI: 10.6977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039828_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.35.9e-12102162262
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  GRMZM2G039828_P01 102 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKGLELRNAELEQRVSTLQNENNTLRQI 162
                        78899***************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-12101165IPR004827Basic-leucine zipper domain
PfamPF001702.5E-10102163IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.967103166IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.1E-16106165No hitNo description
SuperFamilySSF579591.31E-11106163No hitNo description
CDDcd147048.29E-15106156No hitNo description
PROSITE patternPS000360108123IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAAQEQEQEQ EKQQAKTSTT SSLPSSSERS SSSARNNLTE GGAESDEEIR RVPEMGGASA  60
SASSGAGADE RPKGEDGKQG QVAAGAQPPA GGKKRGRTAG DKEQNRLKRL LRNRVSAQQA  120
RERKKAYLTE LEAKAKGLEL RNAELEQRVS TLQNENNTLR QILKNTTAHA SKRSGGGGGG  180
GGKGGDGGKK HHLAKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.859640.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039828
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039828_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350880.0BT035088.1 Zea mays full-length cDNA clone ZM_BFb0038J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131606.11e-134uncharacterized protein LOC100192956
SwissprotQ9SM503e-45HY5_SOLLC; Transcription factor HY5
TrEMBLB4FDA01e-133B4FDA0_MAIZE; Uncharacterized protein
STRINGGRMZM2G039828_P011e-134(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Representative plantOGRP20811737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-33bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]