PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039586_P01
Common NameLOC100191563, ZEAMMB73_980257
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 437aa    MW: 46413.6 Da    PI: 8.5604
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039586_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17248281134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  GRMZM2G039586_P01 248 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 281
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-13239282No hitNo description
SMARTSM004011.3E-17242293IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268246278IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14246281IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-13247279No hitNo description
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
PfamPF003203.5E-15248281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MIATSLSLLI PGCKLPFRHN NHCTSRFGSP LPTLHISHPD LHSSPNHTRS AYIAPSDLER  60
KFLSVHPMSA IYMSQLSTAL PLMEGDHQDH HHHHQGHFQA FTLPKETPIL FPFVISNSSA  120
SEGSLSYGSA ADHHLLRQRH QAMLEPQHMI GGSSTATGNS VFSTPFPTVE SIRDDMIEPA  180
SYDPYDMGKL QVGGSMDACS WTPAAAKMRI TRKATADPSA GKKPRRRAQA GYDDTMSGQP  240
NLGVIRVCSD CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMMAAASG SVSAVPTDSG  300
KASPSNAAVA AAAAHPKVKK EKRVDVDRSL PFKKRCKVVQ QGHGAAVVVA APAAATDSAT  360
VVQATAEDGD DDTCPSRDLL VDDIGGLISW SRSPAAPASA AAATCSFRAS PALPVQQDEI  420
TDAAMLLMTL SCGLVRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.843260.0leaf| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039586
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039586_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280510.0KJ728051.1 Zea mays clone pUT6197 C2C2-GATA transcription factor (GATA29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130465.10.0uncharacterized protein LOC100191563
SwissprotQ6YW489e-72CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A3L6DBT90.0A0A3L6DBT9_MAIZE; GATA transcription factor 21
STRINGGRMZM2G039586_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]