PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G039112_P01
Common NameLOC100383396
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 414aa    MW: 43934.8 Da    PI: 4.37
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G039112_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.8e-1960109255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  GRMZM2G039112_P01  60 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 109
                        789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-3059116No hitNo description
SMARTSM003802.1E-3560123IPR001471AP2/ERF domain
PROSITE profilePS5103219.55960117IPR001471AP2/ERF domain
PfamPF008471.0E-1360109IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1960117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-2760116IPR001471AP2/ERF domain
PRINTSPR003676.1E-86172IPR001471AP2/ERF domain
PRINTSPR003676.1E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MARKRKASDS AAGIDGVHSL PPPLALASTD ACAWASSGGT SMAAVAEAAA AQQQRRGRKR  60
FVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGA NTRTNFWPRP  120
SPASSVAVAA AAHPAPPPPT PPPLPGLMGS PTQPPALPSK VTNLLLLRLR ARNNQQQLLL  180
NATPARQQEA AAAALLQGPL CAEPYGGGEE CAFQVDDFLS YDCGSDENSS QEIEDEEEEE  240
EEEEEEELDF QFMDQQTASP GAGCEGGLCS PFEVVAAELG GAVEAGGGEP ATAVQELMMS  300
RMDYERKISA SLYALSGVSE CIKMRLGAAA GGHAVRDQLS GLREACRKKQ REIVQQQHEQ  360
EPSMDTAEDV KPPREERSPG DGAPEATSSS SEASHGDSDG DVLLWSSLDL APIC
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G039112
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G039112_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671090.0BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169522.10.0uncharacterized protein LOC100383396
TrEMBLC0PFP00.0C0PFP0_MAIZE; Ethylene-responsive transcription factor RAP2-11
TrEMBLK4JRN00.0K4JRN0_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G039112_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-22related to AP2 11