PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G038878_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 20596.7 Da PI: 10.467 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.2 | 2.1e-13 | 9 | 55 | 1 | 50 |
S---SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien r+vtf skRr+g+l L vLCd++v v +fs++gk++ y+ GRMZM2G038878_P01 9 KRIENRVSRHVTFfSKRRKGLL----NLAVLCDVDVGVGVFSERGKVFQYP 55 79**********559******9....699********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-17 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.231 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-13 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-12 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRAKVESKR IENRVSRHVT FFSKRRKGLL NLAVLCDVDV GVGVFSERGK VFQYPGLAGQ 60 AVLPPSPSSF GFLVKNNVAM AKTILAIVAI ISLLVPPAAA TDHDSYNAAP APVPSSKFPT 120 AAAAPTEYDA ADEDKKKSIL PIVLVVAIAS LSMASLSGDS PVRAMAWKGP SSTPRAGSEE 180 DHGSEVSQRR RAWR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G038878 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G038878_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394837.1 | 2e-71 | uncharacterized protein LOC103629878 | ||||
TrEMBL | A0A1D6LUS8 | 1e-137 | A0A1D6LUS8_MAIZE; Putative MADS-box transcription factor family protein | ||||
STRING | GRMZM2G038878_P01 | 1e-138 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-16 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G038878_P01 |