PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038783_P01
Common NameCOL13, ZEAMMB73_932560, Zm.15291
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 364aa    MW: 38808.4 Da    PI: 6.1912
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038783_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-075398342
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        ++C+ +e  ++   C+ +   lC+ C + +H        H +vp+
  GRMZM2G038783_P01 53 VWMCEVCELAPAAVTCKADAAVLCAACDSDIHDAnplarrHARVPV 98
                       689*****************************44677777888875 PP
2CCT70.44.6e-24286329144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  GRMZM2G038783_P01 286 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 329
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-4955IPR000315B-box-type zinc finger
CDDcd000210.002191255No hitNo description
PROSITE profilePS5011910.3815198IPR000315B-box-type zinc finger
CDDcd000214.39E-75498No hitNo description
SMARTSM003361.1E-75698IPR000315B-box-type zinc finger
PfamPF062038.3E-18286328IPR010402CCT domain
PROSITE profilePS5101716.896286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELHKYWGVG GRRCGSCEGA PAAVHCRTCV GGSFLCTTCD ARPAHARLGH ERVWMCEVCE  60
LAPAAVTCKA DAAVLCAACD SDIHDANPLA RRHARVPVAP IGSEAAAAAV EAMLFGTGEA  120
AASEADEQHA AAEHAHAHAH ALNLNVEAKD MKLDYLFSEL DPYLSVEIPR FQHADSVVPN  180
GAGAAVELDF TCGIGVKHSS YSSYTATSLA HSGSSSEVGV VPEAFGGSGS GGGSFELDFT  240
RPKPQAYMPY TGTPQSHSVP SADVEVVPER GDLAAVRPVP LMGESREARL MRYREKRKNR  300
RFEKTIRYAS RKAYAETRPR IKGRFAKRAD HDGDADADDA EAEAEAAVPM SYVLDFGYGV  360
VPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.152910.0ear| endosperm| glume| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038783
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038783_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278410.0KJ727841.1 Zea mays clone pUT5885 C2C2-CO-like transcription factor (COL13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355037.10.0uncharacterized protein LOC100281837
TrEMBLK7WBK70.0K7WBK7_MAIZE; C2C2-CO-like transcription factor
STRINGGRMZM2G038783_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.18e-33CONSTANS-like 5