PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038722_P01
Common NameLOC100285029
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 405aa    MW: 42983.8 Da    PI: 4.5773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038722_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G  +W++ ++  g+ R++k+c++rw +yl
  GRMZM2G038722_P01 16 KGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                       799*****************************99************97 PP
2Myb_DNA-binding506.7e-1669114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e  ++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  GRMZM2G038722_P01  69 RGNFSAEEEETVIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129415.031163IPR017930Myb domain
SuperFamilySSF466898.8E-3013110IPR009057Homeodomain-like
SMARTSM007174.0E-131565IPR001005SANT/Myb domain
PfamPF002494.3E-151663IPR001005SANT/Myb domain
CDDcd001676.16E-111863No hitNo description
PROSITE profilePS5129423.95864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2567117IPR009057Homeodomain-like
SMARTSM007173.3E-1468116IPR001005SANT/Myb domain
PfamPF002494.5E-1469114IPR001005SANT/Myb domain
CDDcd001677.80E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFSAEEEETV IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP  120
SGGEEEHGAA GSNKNKKKKK KKAAGGAEEP LPSPTPSPSP SSSTTTTANC SSGDSGEQQS  180
NTSKEADDDE LDLENLEMMP MLDDDPITFG FDMLVDPVPA PYGPAVSAFA SASRPTSPCA  240
SSTSPPPPPG CAPLGVDDLL VLPEIDIDQE LWSIIDGNGD GGGDGGGSAC AVSAETSAPC  300
CQSNAPEPTT NGACATSHHG AAEEEGKEWW LEDLERELGL WGPVDVEDYH YQYPTGPHGL  360
VANHPDPLPA MVDDPVSCYF QAGPASAVLQ EPGYSVTSSS NLMGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141KKKKKKK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038722
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038722_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701450.0BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170453.10.0myb-related protein Zm1 isoform 1
SwissprotP200241e-103MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A1D6E1F60.0A0A1D6E1F6_MAIZE; Myb domain protein 58
STRINGGRMZM2G038722_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-68myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]