PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038479_P01
Common NamebHLH8, ZEAMMB73_366486
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 275aa    MW: 29106.9 Da    PI: 6.9967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038479_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12111156454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  GRMZM2G038479_P01 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156
                        799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.805107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16110171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-12111161No hitNo description
PfamPF000102.3E-9111156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQHQGAMNEL VSQASFCSPA SPPSFFSAAV GHHSMLDFVS CGVPEQWFLG EEALDKPIHD  60
GAEWVAAGGS HDSAGSDLSS NPPAAGIVLS ERAARRRGRK PGPRSDNPGI SHVEAERQRR  120
EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRGRV EQLEAEAKQQ VASRKLGGNP  180
AMCPASGGLE EKLEVRMVGR NAAALRLTTA STRHAPALLM GALRSLDLPV HNACVSRVGG  240
SATVQDAVVD VPAALQDEGC LRAALLHVLQ QDESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-18110169766Transcription factor MYC2
5gnj_B9e-18110169766Transcription factor MYC2
5gnj_E9e-18110169766Transcription factor MYC2
5gnj_F9e-18110169766Transcription factor MYC2
5gnj_G9e-18110169766Transcription factor MYC2
5gnj_I9e-18110169766Transcription factor MYC2
5gnj_M9e-18110169766Transcription factor MYC2
5gnj_N9e-18110169766Transcription factor MYC2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038479
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038479_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282810.0KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679483.10.0transcription factor MYC3
TrEMBLK7UMR50.0K7UMR5_MAIZE; BHLH transcription factor
STRINGGRMZM2G038479_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.19e-15bHLH family protein