PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G038291_P01 | ||||||||
Common Name | LOC103643080, LOC103655697, ZEAMMB73_117114, ZEAMMB73_689249, Zm.92843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 34434.8 Da PI: 8.3016 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GRMZM2G038291_P01 131 YECKTCNKCFPTFQALGGHRASH 153 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00075 | 231 | 253 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H GRMZM2G038291_P01 231 HECSICGAEFASGQALGGHMRRH 253 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.43E-8 | 130 | 153 | No hit | No description |
Pfam | PF13912 | 1.9E-11 | 130 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.094 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.43E-8 | 226 | 253 | No hit | No description |
Pfam | PF13912 | 2.6E-12 | 230 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 231 | 253 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 231 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 233 | 253 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MQTSSEVVTT KKRIATTTLL MTPTPTSSST DDHSSTAVIK RKQRTKRPRP SAPASSSEST 60 TTEEEEDMAH CLILLAAGAA HASDPSPALL PSSTAPHQSQ APPPRAERYT SRKYTEAAAT 120 PDGVRAGFYV YECKTCNKCF PTFQALGGHR ASHKKPRLAA VNVDGTTTTT TATTMTASPS 180 PPPPLAIAVQ PPPPPRQTTP IEFPDVAVAT ALSLSSSSSV AAAASGKPRA HECSICGAEF 240 ASGQALGGHM RRHRPLNAPD RAVTVATGNS NSKKEGINLE LDLNLPAPSD EEAVVSLLPP 300 PAVMLGLGQF NDGSKAGHML TASALVDCHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 49 | KRPRP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G038291 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G038291_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 2e-62 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 2e-62 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 2e-62 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 2e-62 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664471.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | K7TDX6 | 0.0 | K7TDX6_MAIZE; C2H2-type zinc finger family protein | ||||
STRING | GRMZM2G038291_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G140033_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G038291_P01 |
Entrez Gene | 103643080 | 103655697 |