PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038291_P01
Common NameLOC103643080, LOC103655697, ZEAMMB73_117114, ZEAMMB73_689249, Zm.92843
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 330aa    MW: 34434.8 Da    PI: 8.3016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038291_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055131153123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k+F++   L  H  +H
  GRMZM2G038291_P01 131 YECKTCNKCFPTFQALGGHRASH 153
                        99**********99999998887 PP

2zf-C2H211.80.00075231253123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  F +   L  H+r+H
  GRMZM2G038291_P01 231 HECSICGAEFASGQALGGHMRRH 253
                        78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-8130153No hitNo description
PfamPF139121.9E-11130155IPR007087Zinc finger, C2H2
SMARTSM003550.094131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-8226253No hitNo description
PfamPF139122.6E-12230254IPR007087Zinc finger, C2H2
SMARTSM003550.016231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQTSSEVVTT KKRIATTTLL MTPTPTSSST DDHSSTAVIK RKQRTKRPRP SAPASSSEST  60
TTEEEEDMAH CLILLAAGAA HASDPSPALL PSSTAPHQSQ APPPRAERYT SRKYTEAAAT  120
PDGVRAGFYV YECKTCNKCF PTFQALGGHR ASHKKPRLAA VNVDGTTTTT TATTMTASPS  180
PPPPLAIAVQ PPPPPRQTTP IEFPDVAVAT ALSLSSSSSV AAAASGKPRA HECSICGAEF  240
ASGQALGGHM RRHRPLNAPD RAVTVATGNS NSKKEGINLE LDLNLPAPSD EEAVVSLLPP  300
PAVMLGLGQF NDGSKAGHML TASALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KRPRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038291
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038291_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039892e-62AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040262e-62AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149582e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664471.10.0zinc finger protein ZAT5
TrEMBLK7TDX60.0K7TDX6_MAIZE; C2H2-type zinc finger family protein
STRINGGRMZM2G038291_P010.0(Zea mays)
STRINGGRMZM2G140033_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-37C2H2 family protein