PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G038252_P01
Common NameZm.28488
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 273aa    MW: 30387.8 Da    PI: 6.5109
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G038252_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32.1e-2195155257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  GRMZM2G038252_P01  95 RQRWQPTPMQLQILENIFDQgNGTPSKQRIKEITAELshhgQISETNVYNWFQNRRARSKR 155
                        89*****************99**************************************97 PP
2Wus_type_Homeobox100.81e-3294157265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  GRMZM2G038252_P01  94 ARQRWQPTPMQLQILENIFDQGNGTPSKQRIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 157
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-1790160IPR009057Homeodomain-like
PROSITE profilePS5007114.94991156IPR001356Homeobox domain
SMARTSM003891.3E-1493160IPR001356Homeobox domain
SuperFamilySSF466891.58E-1894158IPR009057Homeodomain-like
PfamPF000463.5E-1995155IPR001356Homeobox domain
CDDcd000864.10E-1595157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEWVDRTKAS AAAAAAAADE RAGGAEGLAG YVKVMTDEQM EVLRKQISIY ATICEQLVEM  60
HRALTEHQDT IAGIRFSNLY CDPQIIPGGH KITARQRWQP TPMQLQILEN IFDQGNGTPS  120
KQRIKEITAE LSHHGQISET NVYNWFQNRR ARSKRKQAAS LPNNAESEAE VDEESLTDKK  180
PKSDRSLQDN KAMGAHNADR ISGMHHLDTD HDQIGGMMYG CNDNGLRSSG SSGQMSFYGN  240
IMPNPRIDHF PGKVESSRSF SHLQHGEGFD MFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.284880.0ear| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G038252
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G038252_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639190.0BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288365.10.0WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-129WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLC0P6K00.0C0P6K0_MAIZE; HB transcription factor
TrEMBLK4JE980.0K4JE98_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM2G038252_P020.0(Zea mays)
STRINGGRMZM2G069274_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-58WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]