PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037792_P01
Common NameGRAS79, ZEAMMB73_828356, Zm.79493
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 718aa    MW: 75350.4 Da    PI: 6.094
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037792_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.26.5e-833607173374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a + g+    +++Larl+++  p g+p+ R a+y++eAL   l++      ++ ++  +s+ +++ +l a+k fs++sP+l+f+
  GRMZM2G037792_P01 360 DELAAAAKAAEVGNSIGGREILARLNQQLPPIGKPFLRSASYLKEALLLALTD-----GHQGSTHLSSPLDVALKLGAYKSFSDLSPVLQFA 446
                        7899*************************************************.....555566666666799******************* PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++++   +++HiiDfd++ G+QW+++lq++a R+    ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef+ 
  GRMZM2G037792_P01 447 NFTATQALLDEIASTtsSCIHIIDFDLGVGGQWASFLQEFAHRRgtgnAPLPMLKLTAFVSSASHHPLELHLTRENLTQFAVDLGIPFEFTD 538
                        **********998877799************************988666688**************************************** PP

               GRAS 181 lvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ e+ + +p+E++aV++ +          +l+     +L+lvk+l Pk+ v +++ +d+++ +F ++f+++++ ++ l+dsl
  GRMZM2G037792_P01 539 I---NLDAFDPAEFiAPSPNEVVAVCIPVGCSART---PPLPM----LLQLVKQLAPKIAVAIDHGSDRGDLPFSQHFMNCFQSCMFLLDSL 620
                        9...899999888725666*********9766554...56666....********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  ++++++++k+Er+l++++++++v  + ++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++ve+    l l+W+
  GRMZM2G037792_P01 621 DAA-GTNADAASKIERFLIQPRVEDAVLGRRKA-----ENAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQ 706
                        999.8999*******************988887.....999*************************************************** PP

               GRAS 364 drpLvsvSaWr 374
                        + +LvsvSaWr
  GRMZM2G037792_P01 707 SGELVSVSAWR 717
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.666332697IPR005202Transcription factor GRAS
PfamPF035142.2E-80360717IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MRAAPFSADG KGAGTIEALL WPNGKGGGGG DLLLEPTSVL DCRRSPSPRY SSSTLSSSLG  60
GAAGDSSSGV AAVSENSAAA AAEATKWAAP GEHRGGGEGG GGGGSRKEWS GGELPPIPGT  120
LDIGFGAEEG WDAMLGDAAA VVGQDQTFLN WIMTAPGDME PPALALLGNA AGFEFPASDP  180
IGFSLQHHPT GGGTSVGALA SDLSSPSARS LTSSSGSSSK ATSTFGLLRT EAVFQPPPPA  240
TTMPFHDGAD IKPAHLGVPS ASLLLNQHQA LSAASFMPLP SFPDHQHQPH LPPPPKRHHS  300
MPENLFLLQN QLQPPPPPPQ GLRFPPLHTT APFQLQPSLQ PPRGSMKTTP AAQQHQQLLD  360
ELAAAAKAAE VGNSIGGREI LARLNQQLPP IGKPFLRSAS YLKEALLLAL TDGHQGSTHL  420
SSPLDVALKL GAYKSFSDLS PVLQFANFTA TQALLDEIAS TTSSCIHIID FDLGVGGQWA  480
SFLQEFAHRR GTGNAPLPML KLTAFVSSAS HHPLELHLTR ENLTQFAVDL GIPFEFTDIN  540
LDAFDPAEFI APSPNEVVAV CIPVGCSART PPLPMLLQLV KQLAPKIAVA IDHGSDRGDL  600
PFSQHFMNCF QSCMFLLDSL DAAGTNADAA SKIERFLIQP RVEDAVLGRR KAENAMAWRA  660
VFTSAGFAPV PLSNLAEAQA DCLLKRVQVR GFHVEKCGMG LALYWQSGEL VSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2443371780375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.794930.0aerial organ| ear| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037792
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037792_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620280.0BT062028.1 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167982.10.0uncharacterized protein LOC100381701
TrEMBLA0A3L6G6190.0A0A3L6G619_MAIZE; Scarecrow-like protein 6
TrEMBLC0HI720.0C0HI72_MAIZE; GRAS transcription factor
STRINGGRMZM2G037792_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-89GRAS family protein