PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G037286_P01
Common NameGRAS56, LOC103631576
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 489aa    MW: 51240.9 Da    PI: 6.1941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G037286_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.31.8e-841054792373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        + lL+e A avs g+l+ a+ +L +l ++asp++ +  +Rl+ayft+ALaarl++s+ ++++ l+p  ++      + aa+++f++vsP+ +
  GRMZM2G037286_P01 105 IALLMESAVAVSVGNLADANGMLLELAQMASPYAsSCGERLVAYFTKALAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSPLAR 190
                        689*******************************66779**********************888776665......678899********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        f++l++NqaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++l +pfef +++
  GRMZM2G037286_P01 191 FAYLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVLRVTGFGI----SRSALHDTGNQLAGLASKLSMPFEFYAIA 278
                        ***************************988447**************************....9**************************86 PP

               GRAS 183 akrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.............sFler 256
                         +  +++      ++ + +pgEalaV++    h l+d  ++ +     +++lv+ l+Pkv+++veqe    +++              Fl+r
  GRMZM2G037286_P01 279 RRPGDAVvgaaAADMPSRRPGEALAVHWLR--HALYDAAGDDAA----TMQLVRWLEPKVLTLVEQERGSpGDGgagagaaghdehgHFLDR 364
                        66666664442444445566********98..888866666666....*******************66655556778888888888***** PP

               GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                        f++al++ysa+fdsl a+ p+++   r+ vE+ +lgrei nv+a  g +r  r + ++ W++ l++ GF  +  + +a+  a      ++ +
  GRMZM2G037286_P01 365 FVSALHHYSAMFDSLGASRPSDEdASRHLVEQGVLGREIGNVLAVGGPSRSGRGK-FGCWQAELDRLGFLRAGGGGRAQLVAG----ACPaG 451
                        ***************88888887699***********************999977.**************9999998766665....55556 PP

               GRAS 347 dgyrveeesgslv.lgWkdrpLvsvSaW 373
                         gy+v ++++  v lgWk+ pL++vS W
  GRMZM2G037286_P01 452 LGYTVADDQDGTVrLGWKGTPLYAVSTW 479
                        67****88777666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.06978462IPR005202Transcription factor GRAS
PfamPF035146.4E-82105479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MQDSLSLMQF HDPYLYGGSA GSASLPLPHP FLPQHHQGFV HGCTSKGVAE FVDPEATAEV  60
GGEQGFAVSK EVSEGGGDGA VEVEERNDAA TTARGEEEAH GVRMIALLME SAVAVSVGNL  120
ADANGMLLEL AQMASPYASS CGERLVAYFT KALAARLMSS WVGICAPLAP PCAAVHAAFR  180
AFYNVSPLAR FAYLACNQAI LEAFHGKRLV HIVDLDVVPG GALQWLSLLP ALAARPGGPP  240
VLRVTGFGIS RSALHDTGNQ LAGLASKLSM PFEFYAIARR PGDAVVGAAA ADMPSRRPGE  300
ALAVHWLRHA LYDAAGDDAA TMQLVRWLEP KVLTLVEQER GSPGDGGAGA GAAGHDEHGH  360
FLDRFVSALH HYSAMFDSLG ASRPSDEDAS RHLVEQGVLG REIGNVLAVG GPSRSGRGKF  420
GCWQAELDRL GFLRAGGGGR AQLVAGACPA GLGYTVADDQ DGTVRLGWKG TPLYAVSTWA  480
WCPSPHAQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-97944808378Protein SCARECROW
5b3h_D3e-97944808378Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G037286
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G037286_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650678.10.0protein SCARECROW
TrEMBLA0A1D6M6V40.0A0A1D6M6V4_MAIZE; Protein SCARECROW
STRINGGRMZM2G037286_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Representative plantOGRP1426844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-76GRAS family protein