PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036966_P01
Common NameLOC100381403
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 424aa    MW: 46686 Da    PI: 10.5272
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036966_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.13.2e-1054144297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         fqr ws  De+ +L++l +++ ++g        +++  + +s++ + v  ++l  K r++K+++ ++v k     +   + +h++  + ls
  GRMZM2G036966_P01  54 PFQRAWSPGDEVRILKALATYRREHGG-RLPTPVELFGALDGSLEKEgVGAKELAIKQRSFKRRYDRDVMK-----NAPPADKHERRLYLLS 139
                        59************************5.56666677888888887654999*****************999.....455678999******* PP

             DUF573  93 kkiWg 97 
                        k +Wg
  GRMZM2G036966_P01 140 KHVWG 144
                        ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-1455144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAPSSPQLKE PSSAVKQAST GPAALPERTK RKTSPSLPEA SGATQQPAKR KPPPFQRAWS  60
PGDEVRILKA LATYRREHGG RLPTPVELFG ALDGSLEKEG VGAKELAIKQ RSFKRRYDRD  120
VMKNAPPADK HERRLYLLSK HVWGRVPPPR PPVAKVGSAT QAKGAGAQAS KADAQAQAQA  180
KSADHQSGKE ALKPKAKTLD EMRELYPYLV DEATILVEPA VLERVLLNIG DIDAQVLDKK  240
IRKARKQLAD AITESARINN MEVPTIFLFT SSKLQPEKLR VENENNLLVD HLEKMDDVDI  300
CAKQRLARVE REVKELRQTV IAYQSQAKGI ICESAKGGLQ SIVAENQTPA NILQKKTEVP  360
NDLIHKKNAA VTSKYHCAVP HNVPPNKPKM QGVMLPPSKA FPGMPRKIDK SPTPRKAIWK  420
GPIC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.350650.0endosperm| meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036966
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036966_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611800.0BT061180.1 Zea mays full-length cDNA clone ZM_BFb0119I15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167715.10.0uncharacterized LOC100381403
TrEMBLC0HFS40.0C0HFS4_MAIZE; Uncharacterized protein
TrEMBLK0D9L90.0K0D9L9_MAIZE; GBP15 GeBP type transcription factor (Fragment)
STRINGGRMZM2G036966_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.11e-07DNA-binding storekeeper protein-related transcriptional regulator