PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G036837_P01 | ||||||||
Common Name | ZEAMMB73_121035, Zm.96517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 471aa MW: 49727.3 Da PI: 7.4922 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 62 | 88 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +G+rC+++H++ GRMZM2G036837_P01 62 PGEADCGYYLRTGACGFGERCRYNHPR 88 57899********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 4.8e-12 | 112 | 137 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tGtCk+G++Ck++H++ GRMZM2G036837_P01 112 GQPVCEYYLKTGTCKFGSNCKYHHPK 137 7899********************96 PP | |||||||
3 | zf-CCCH | 40.2 | 5.5e-13 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ GRMZM2G036837_P01 158 EKECSYYMKTGQCKFGSTCKFHHPE 182 689********************96 PP | |||||||
4 | zf-CCCH | 37.5 | 4e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H++ GRMZM2G036837_P01 308 PGQPECQYYMRTGDCKFGTTCKYNHPR 334 5789*********************96 PP | |||||||
5 | zf-CCCH | 31.4 | 3.2e-10 | 357 | 380 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a++G+C+yG Ck+ H++ GRMZM2G036837_P01 357 QPCAYYAQNGYCRYGVACKYDHSM 380 69********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.676 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 61 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-8 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 67 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-7 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.483 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-10 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-7 | 113 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-6 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-6 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 157 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 161 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-4 | 313 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 354 | 383 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 357 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MEPPHAEQAV AAVAAGGEGG TASPGTGLEG PVLRRGLDGG GEGEDGELGA GQEANARLPE 60 RPGEADCGYY LRTGACGFGE RCRYNHPRDR GGTEFGGGAK NGAAQDFPER QGQPVCEYYL 120 KTGTCKFGSN CKYHHPKQDG SVQSVILNNN GFPLRLGEKE CSYYMKTGQC KFGSTCKFHH 180 PEFGGIPVTP GIYPPLQSPS VPSPHTYAPN WQMGRSPAVP GSYIPGSYTP MMISSGMVPL 240 QGWSPYPASV NPVASGGAQQ TVQAGPLYGI GHHGSSTAIA YGGTYLPYSS SAGQSSNNHQ 300 EHGFPERPGQ PECQYYMRTG DCKFGTTCKY NHPRDWSTPK SNYMFSHLCL PLRPGAQPCA 360 YYAQNGYCRY GVACKYDHSM GTLGYSSSAL PLSDMPIAPY PISFSVATLA PSSSSPEYIS 420 TKDPSINHVV SPVAGPAPVG AILPKGVFHH DTIMQTQTPT SAGSSSPGGG R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96517 | 0.0 | ear| endosperm| meristem| ovary| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G036837 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G036837_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066426 | 0.0 | BT066426.1 Zea mays full-length cDNA clone ZM_BFc0163G12 mRNA, complete cds. | |||
GenBank | BT086241 | 0.0 | BT086241.1 Zea mays full-length cDNA clone ZM_BFc0136N19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150480.1 | 0.0 | uncharacterized protein LOC100284111 | ||||
Swissprot | Q5NAW2 | 0.0 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | C0PDQ7 | 0.0 | C0PDQ7_MAIZE; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | K0DF59 | 0.0 | K0DF59_MAIZE; C3H28 transcription factor (Fragment) | ||||
STRING | GRMZM2G036837_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 | Representative plant | OGRP2865 | 11 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-122 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G036837_P01 |
Publications ? help Back to Top | |||
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