PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036554_P02
Common NameLOC103641360, ZEAMMB73_653283, Zm.18916
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 359aa    MW: 37615.2 Da    PI: 5.8498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036554_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.3e-14195240555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  GRMZM2G036554_P02 195 HIVAERKRREKINNRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 240
                        8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.885190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-15195244No hitNo description
PfamPF000102.4E-11195240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAANNMEDT SLLMEWAMDT LLQEEEEPAA LYDSCGEAVA VFPSLQGLRD ASHAAEMVRE  60
LMAAVETDDA ANSWTTSGSG GEVTDGGSSG ATDPAAPAAA EAADFYGGSG PPHSPNSFPS  120
GKTNTSLPTV RVSWNFVTGS AAAQPRSDGV LEEGAVPIRR VPPELAHRRR SPPPPPRRAH  180
HPTRGMGAAS CTPEHIVAER KRREKINNRL IELSTVIPGL KKMDKATILS DAAKYVKELQ  240
QRLKALEEAA AAAAGSSRTK APTTTDENGG SRSPTSASSS SGSPALPEIE ARFSERSAMV  300
RIHCGGGKGV AAAALAVVEG LGLTVVHANV MPFSICTIII TITAEASPFS FSFFFVRHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036554
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036554_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071908e-38AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588628e-38HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401639.10.0transcription factor MYC2
TrEMBLA0A1D6J1T60.0A0A1D6J1T6_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G036554_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4161723
Representative plantOGRP1736623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-15bHLH family protein