PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G036297_P01
Common Namelg1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 399aa    MW: 43359.1 Da    PI: 7.815
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G036297_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40183261178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  GRMZM2G036297_P01 183 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 261
                        6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.7E-34178246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291181259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-37182262IPR004333Transcription factor, SBP-box
PfamPF031108.0E-31184258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMNLSAAANG RDEFPPYVVP SNAAAPPPSL LPTMEQQQES SIHREHHQLL GYNLEANSLA  60
LLPPSNAAAA HHHTTFAGGH SPHDILHFYP PPSAASHYLA AAGGNPYSHL VSAPGTTFHQ  120
TSSSYYPPAA AAQAAPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH  180
PPRCQAEGCK ADLSSAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD  240
AKKSCRKRLA DHNRRRRKSK PSDADAGDKK RAHANKAAAA KDKAESSSKN MDIGDGLGAQ  300
ILGSALLSKE QDQAMDLGEV VKEAVDPKGK ASMQQHYGFP FHSSSAGSCF PQTQAVSSDT  360
TSNIGQVQEP SLGFHHHQHH QHSNILQLGQ AMFDLDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271842581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253270RRRRKSKPSDADAGDKKR
2254259RRRKSK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G036297
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development.
UniprotTISSUE SPECIFICITY: Leaf ligular region, blade and sheath.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Function -- GeneRIF ? help Back to Top
  1. Liguleless narrow mutation affects proximal-distal signaling and leaf growth
    [PMID: 23250214]
  2. The regulatory interaction of LG1 and WAB1 reveals a link between leaf shape and tassel architecture, and suggests the ligule is a boundary similar to that at the base of lateral organs.
    [PMID: 25359728]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G036297_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105543.20.0protein LIGULELESS 1
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A1D6DVJ60.0A0A1D6DVJ6_MAIZE; Protein LIGULELESS 1
STRINGGRMZM2G036297_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-42squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Kaplinsky NJ,Braun DM,Penterman J,Goff SA,Freeling M
    Utility and distribution of conserved noncoding sequences in the grasses.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(9): p. 6147-51
    [PMID:11972021]
  2. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]
  3. Moon J,Candela H,Hake S
    The Liguleless narrow mutation affects proximal-distal signaling and leaf growth.
    Development, 2013. 140(2): p. 405-12
    [PMID:23250214]
  4. Lewis MW, et al.
    Gene regulatory interactions at lateral organ boundaries in maize.
    Development, 2014. 141(23): p. 4590-7
    [PMID:25359728]
  5. Moreno MA,Harper LC,Krueger RW,Dellaporta SL,Freeling M
    liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis.
    Genes Dev., 1997. 11(5): p. 616-28
    [PMID:9119226]