PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G035944_P02 | ||||||||
Common Name | LOC100194214, TCP7, ZEAMMB73_120862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 275aa MW: 29585.3 Da PI: 9.4114 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.2 | 5.5e-29 | 56 | 124 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ GRMZM2G035944_P02 56 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQA 124 78*************************************************************998882 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-26 | 57 | 118 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MISGNLTNED LGAGRTKAEG PTTAARAVAK SPVLPSSRHW PPSTESRIVR VSRVFGGKDR 60 HSKVRTVKGL RDRRVRLSVP TAIQLYDLQD RLGLSQPSKV VDWLLDAAQH EIDKLPPLQF 120 PPQAAQDLVA HLPPPSMVAP FAADRAEADG DKRHCHAGVK GLMGLNNSIR LVNATMPLAH 180 GLYYTPGESW TGTNADDAAA HDHQTVAHGH SPFSSLLSLA APGPQLVFYS SEGGGFTMKE 240 EATGYQFPVQ NSLDHSQGQL SLSSARSFLR PGNQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G035944 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G035944_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036694 | 0.0 | BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds. | |||
GenBank | BT068942 | 0.0 | BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds. | |||
GenBank | BT069279 | 0.0 | BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339734.1 | 0.0 | uncharacterized protein LOC100194214 | ||||
TrEMBL | B4FHV6 | 0.0 | B4FHV6_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G035944_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-35 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G035944_P02 |
Entrez Gene | 100194214 |