PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G035701_P01
Common NameABI19, ZEAMMB73_436245, Zm.13587
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 292aa    MW: 32431.6 Da    PI: 7.7508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G035701_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1874170295
                        EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        +k+l +sdv+++gr+vlpkk ae++    + k   +k l + d ++++ W++k++y  ++ks++yvl+ ++ ++vka++L++gDf+v++ d+
  GRMZM2G035701_P01  74 QKELRNSDVSQLGRIVLPKKEAESYlpilMAK--DGKSLCMHDlLNSQLWTFKYRYwfNNKSRMYVLE-NTGDYVKAHDLQQGDFIVIYKDD 162
                        7999***********************87434..5678*****8899*******9999999999***9.********************444 PP

                        SSEE..EEE CS
                 B3  87 rsefelvvk 95 
                         ++ ++v++
  GRMZM2G035701_P01 163 -ENNRFVIG 170
                        .55555665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.00E-2572169No hitNo description
Gene3DG3DSA:2.40.330.101.9E-2572179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.79873175IPR003340B3 DNA binding domain
SMARTSM010194.8E-1273175IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-2073169IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-1574170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAGITKRRTS PASTSSSSGD VLPQRVTRKR RSARRGPRST ARRPSAPPPM NELDLNTAAL  60
DPDHYATGLR VLLQKELRNS DVSQLGRIVL PKKEAESYLP ILMAKDGKSL CMHDLLNSQL  120
WTFKYRYWFN NKSRMYVLEN TGDYVKAHDL QQGDFIVIYK DDENNRFVIG AKKAGDEQTA  180
TVPQVHEHMH ISAALPAPQA FHDYAGPVAA EAGMLAIVPQ GDEIFDGILN SLPEIPVANV  240
RYSDFFDPFG DSMDMANPLS SSNNPSVNLA THFHDERIGS CSFPYPKSGP QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-41691841116B3 domain-containing transcription factor FUS3
6j9b_D5e-41691841116B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631TRKRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.135870.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G035701
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in anthers, pollen grains and young developing embryos. {ECO:0000269|PubMed:17913295}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G035701_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279700.0KJ727970.1 Zea mays clone pUT6084 ABI3VP1 transcription factor (ABI19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656805.10.0B3 domain-containing protein LFL1
SwissprotA4LBC01e-114LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A1D6G3820.0A0A1D6G382_MAIZE; Putative B3 DNA binding domain family protein
TrEMBLA0A3L6DRN40.0A0A3L6DRN4_MAIZE; B3 domain-containing protein LFL1
TrEMBLK7V4V90.0K7V4V9_MAIZE; ABI3VP1 transcription factor (Fragment)
STRINGGRMZM2G035701_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]