PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G035625_P01
Common NameLOC100383235
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 525aa    MW: 55298.9 Da    PI: 8.0139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G035625_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0599121123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  GRMZM2G035625_P01  99 FVCEICHKGFQRDQNLQLHRRGH 121
                        89*******************88 PP
2zf-C2H212.30.00051213231523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg++Fsr++++++H   +
  GRMZM2G035625_P01 213 DCGTVFSRRDSFVTHRAFC 231
                        9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-698121No hitNo description
PROSITE profilePS5015710.63799121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4171203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-6178203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSGAAGRECT GGGGSRSSSF SSVSNASPTE VEEEFLRYHT NPLLGGPTTE MRDDGGVTGG  60
PSDQPPLTVK KKRSLPGTPD PSAEVIALSP RTLMATNRFV CEICHKGFQR DQNLQLHRRG  120
HNLPWKLRQR GGPGGGADGG GPPRKRVYVC PEASCVHHNP ARALGDLTGI KKHYCRKHGE  180
KKWKCERCAK RYAVHSDWKA HAKVCGTREY KCDCGTVFSR RDSFVTHRAF CDALAQENNK  240
LSQPMNMATV ASALQGQAPH HHHHHHLALP SSSQAADDHD NAAGDDDNDG DDFAIDTKSP  300
QLRMLPAMSD SAAADNNNNN NPLFLPPPSM AGCMLSSLQQ GGAARPAPPP PASYFSGGGK  360
AAGLYDPSAS SPASMSATAL LQKAAEMGAT AGGYGAGAGF STVGFGPMMA GPSVMGLFGP  420
VKTPAALSLE VYDGMPLGPT QLVGLDVGRL LPGQHHLYGS SHGHGVGIGS MTRAIGSLMH  480
GGGQQAEQHR RPDDDTRVVD YLGVDDQRTC FSGVSPFGPH IGPWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33179246370Zinc finger protein JACKDAW
5b3h_F3e-33179246370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G035625
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G035625_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169368.10.0uncharacterized protein LOC100383235
SwissprotQ9ZWA61e-103IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A3L6F9W60.0A0A3L6F9W6_MAIZE; Zinc finger protein MAGPIE
TrEMBLC0PED30.0C0PED3_MAIZE; Protein indeterminate-domain 11
STRINGGRMZM2G035625_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]