PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G035405_P02 | ||||||||
Common Name | ARF18, LOC100502480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 739aa MW: 81995.3 Da PI: 6.9865 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.3e-17 | 2 | 61 | 38 | 99 |
EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ GRMZM2G035405_P02 2 AKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 61 589*******************************************..7777778***9997 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 86 | 169 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv+++ k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dld+vrWpnS+Wrs+k GRMZM2G035405_P02 86 AAHAASTNSRFTIFYNPRASPSEFVIPLVKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVK 169 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.887 | 1 | 62 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.79E-21 | 2 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-23 | 2 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-12 | 3 | 60 | No hit | No description |
Pfam | PF02362 | 9.8E-15 | 3 | 61 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.6E-34 | 86 | 169 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 9.81E-8 | 597 | 682 | No hit | No description |
PROSITE profile | PS51745 | 23.318 | 606 | 690 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.6E-5 | 652 | 692 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND NNQLLLGIRR 60 ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLVKYVKAV 120 YHTRISVGMR FRMLFETEES SVRRYMGTIT GICDLDSVRW PNSHWRSVKV GWDESTAGER 180 QPRVSLWEIE PLTTFPMYPS PFPLRLKRPW PTGLPSLHGG KDDDLANSLM WLRDTANPGF 240 QSLNFGGLGM SPWMQPRLDA TLLGLQPDMY QAMATAAFQD ATKQASPTML QFQQPQNIAG 300 RASPLLSSQI LQQAHHQFQQ QPYLQNISES TIQAQGQSEF LKQQIQRSQS FNEQKPQMQH 360 QQESQQQQQP QCLPVPQHQQ MQQQNMTNYQ SISNALSPFS QLSPVSQSSP MALQTILPFS 420 QAQSFTDTNV GSLSPSNGNT MQNTLRPFSS EAVSHLSMPR PTAIPVADPW SSKRVAVESL 480 LPSRPQVSSQ MEQLDPAPAS IPHSSALAPL PGRGCLVDQD VNSDPQNHLL FGVSIDSQSL 540 LMQGGIPGLQ NGNDSAAIPY STSNFLSPSQ NDFPLDHTLN SSGCLDDSGY VPPCSDNSDK 600 VNRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLEDPL RSGWQLVFVD 660 REEDVLLVGD DPWQEFVSTV SCIKILSPQE VQQMGKQGLE LLSSAPARRL GSSCDDYVSR 720 QESRSLSTGI ASVGSVELG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 8e-79 | 1 | 190 | 199 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.82394 | 0.0 | cell lignification| endosperm| meristem| ovary| root| shoot| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G035405 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G035405_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726816 | 0.0 | KJ726816.1 Zea mays clone pUT3355 ARF transcription factor (ARF18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001333731.1 | 0.0 | uncharacterized protein LOC100502480 | ||||
Refseq | XP_008644237.1 | 0.0 | uncharacterized protein LOC100502480 isoform X1 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A1D6GSS0 | 0.0 | A0A1D6GSS0_MAIZE; Auxin response factor | ||||
TrEMBL | A0A3L6ETW6 | 0.0 | A0A3L6ETW6_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G035405_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 1e-166 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G035405_P02 |
Publications ? help Back to Top | |||
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